CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY13472
CDY34012
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30400.1	CDX93852	AT1G62990.1	15781858
AT2G30400.1	CDY45968	AT1G62990.1	15781858
AT2G30400.1	CDY64892	AT1G62990.1	15781858
AT2G30400.1	CDY66559	AT1G62990.1	15781858
AT2G30400.1	CDX83145	AT4G08150.1	15781858
AT2G30400.1	CDY34012	AT4G08150.1	15781858
AT2G30400.1	CDY68624	AT4G08150.1	15781858
AT2G30400.1	CDX68812	AT4G32040.1	15781858
AT2G30400.1	CDX72343	AT4G32040.1	15781858
AT2G30400.1	CDX75215	AT4G32040.1	15781858
AT2G30400.1	CDY13472	AT4G32040.1	15781858
AT2G30400.1	CDX78407	AT5G11060.1	15781858
AT2G30400.1	CDX80491	AT5G25220.1	15781858
AT2G30400.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29674	Canola	nucleus	94.64	92.59
CDY10735	Canola	nucleus	76.66	78.64
CDY02063	Canola	nucleus	75.39	76.85
CDY62219	Canola	nucleus	71.61	73.46
AT2G30400.1	Thale cress	nucleus	73.19	72.5
CDX84837	Canola	nucleus	54.89	72.5
CDY32706	Canola	cytosol	9.78	62.0
CDY02814	Canola	cytosol	9.15	58.0
CDY06241	Canola	mitochondrion	50.79	53.49
CDY09945	Canola	nucleus, plastid	50.16	52.82
CDY67505	Canola	nucleus, plastid	49.21	51.83
CDY04827	Canola	nucleus	26.5	32.68
CDY43860	Canola	nucleus	27.44	30.0
CDY32990	Canola	nucleus	26.81	29.72
GSMUA_Achr3P09850_001	Banana	mitochondrion	27.44	27.44
CDY44933	Canola	mitochondrion	15.77	24.27
CDY42284	Canola	mitochondrion	15.46	23.67
CDX75076	Canola	nucleus	13.56	23.12
CDY43753	Canola	nucleus	13.25	22.58
CDX92512	Canola	mitochondrion	14.83	21.96
CDY58970	Canola	mitochondrion	14.83	21.96
CDY09258	Canola	mitochondrion	20.19	20.0
CDX78899	Canola	mitochondrion	18.93	18.4
CDX99420	Canola	mitochondrion	18.61	18.04
CDY01560	Canola	nucleus	19.87	17.7
CDY29238	Canola	nucleus, plastid	15.77	16.5
CDY36485	Canola	nucleus	16.09	16.35
CDY32705	Canola	mitochondrion	10.41	16.34
CDY59540	Canola	plastid	14.51	15.92
CDY43893	Canola	nucleus	15.77	15.87
CDY72229	Canola	nucleus	15.46	15.61
CDY02815	Canola	plastid	8.52	13.64
CDY62560	Canola	nucleus	17.67	11.86

Protein Annotations

MapMan:15.5.37	GO:A0A078E6T0	EnsemblPlants:CDX97830	ProteinID:CDX97830	ProteinID:CDX97830.1	InterPro:DNA_bnd_dom_ovate
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00105142001	InterPro:IPR006458
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF22	TIGRFAMs:TIGR01568	UniParc:UPI0004EE9040	SEG:seg	:	:

Description

BnaC04g41090D

Coordinates

chrLK031901:-:785794..786747

Molecular Weight (calculated)

36139.9 Da

IEP (calculated)

10.463

GRAVY (calculated)

-0.968

Length

317 amino acids

Sequence
(BLAST)

001: MGKYKFKISD MISNPWFHKL KDMTKQSKPK SKPISSSSSS HTHNKKNPSY APPQQSSTSH FSISLVAKSP HHNSPRNSLH RKRMSERKTL YKPSLKPITP
101: LGFNNSKING QDSSHCAFPA LEKSTESSVY SFYQEEDDGF VDPSNFKVDT KNKAFTKYKA KGSGSIEKAC PASNLTKKPL KSHLSVKINK GKQEEDDEAC
201: REKKYKKQVS SGRNSSAGIN LRRVNSPRIQ LSGTRRSTSR SESRQLVLES YAVMKRSVDP KKDFRESMVE MIEENNIRAS KDLEDLLACY LSLNAKEYHD
301: LIIQVFEQIW RQLTKHM

Best Arabidopsis Sequence Match ( AT2G30400.1 )
(BLAST)

001: MGNYKFRISE MLPNAWFHKL KDVTKHSKPK NKASSSSSNT CSKKKPSSDS LPQHSYFSNS LVANNPPHHN SPRNSLHTKK MSKRKTLYKP SLKPLTPPPL
101: LVSASFNKSK INDQDSSYSL FPAIETSPES FVYSFYEEDD DDEFVEFSNF KINTKNKAFT KQKVKVIDSV EKACTASKPI KKPQKSHLSV KISRDEDDNE
201: YKAEKKYQRQ VSSGRKPSAG INLKRVNSPR IQLSGTRRST SRRSESKQDV LESFAVMKRS VDPKKDFRES MIEMIEENNI RASKDLEDLL ACYLTLNPKE
301: YHDLIIHVFE QIWLQLTKTK

Arabidopsis Description

OFP2Transcription repressor OFP2 [Source:UniProtKB/Swiss-Prot;Acc:O04351]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.