Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12943 | Canola | nucleus | 99.22 | 99.22 |
| Bra027050.1-P | Field mustard | nucleus | 98.96 | 99.21 |
| AT1G62360.1 | Thale cress | nucleus | 91.38 | 91.62 |
| KRH02013 | Soybean | nucleus | 53.0 | 75.46 |
| VIT_10s0116g00190.t01 | Wine grape | nucleus | 61.88 | 67.71 |
| PGSC0003DMT400043083 | Potato | nucleus | 56.92 | 63.56 |
| Solyc02g081120.2.1 | Tomato | nucleus | 58.49 | 63.28 |
| KRH51140 | Soybean | nucleus | 59.53 | 62.98 |
| KRH11492 | Soybean | nucleus | 61.62 | 62.93 |
| KRH36506 | Soybean | nucleus | 61.1 | 61.74 |
| CDY41449 | Canola | nucleus | 19.32 | 61.16 |
| CDY34012 | Canola | nucleus | 29.24 | 58.03 |
| CDY69524 | Canola | nucleus | 22.19 | 41.67 |
| CDX91713 | Canola | nucleus | 33.68 | 41.08 |
| CDY70923 | Canola | nucleus | 21.67 | 40.49 |
| CDY03742 | Canola | nucleus | 33.94 | 39.76 |
| CDY09448 | Canola | nucleus | 33.68 | 39.45 |
| CDX83145 | Canola | nucleus | 40.99 | 39.05 |
| KRH73381 | Soybean | cytosol | 23.24 | 38.7 |
| CDY68624 | Canola | nucleus | 29.5 | 32.38 |
| CDY41448 | Canola | nucleus | 15.4 | 28.37 |
| CDX88165 | Canola | nucleus | 20.63 | 26.42 |
| CDY04722 | Canola | nucleus | 15.14 | 26.24 |
| CDX93852 | Canola | nucleus | 15.14 | 26.13 |
| CDY44142 | Canola | nucleus | 15.67 | 25.53 |
| CDY64892 | Canola | nucleus | 19.32 | 25.17 |
| CDY66559 | Canola | nucleus | 19.32 | 25.17 |
| CDY45968 | Canola | nucleus | 19.06 | 24.91 |
| CDX78407 | Canola | nucleus | 21.41 | 21.24 |
| CDY05371 | Canola | nucleus | 22.19 | 21.04 |
| CDY51104 | Canola | nucleus | 21.41 | 20.87 |
| CDX70374 | Canola | nucleus | 16.45 | 20.86 |
| CDX75215 | Canola | nucleus | 20.37 | 20.86 |
| CDX85732 | Canola | nucleus | 21.15 | 20.61 |
| CDX68812 | Canola | nucleus | 20.1 | 20.59 |
| CDY05480 | Canola | nucleus | 22.45 | 20.48 |
| CDY13472 | Canola | nucleus | 20.37 | 20.42 |
| CDX72343 | Canola | nucleus | 20.37 | 19.5 |
| CDX80491 | Canola | nucleus | 21.15 | 18.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078FYY6 | UniProt:A0A078FYY6 | EnsemblPlants:CDY19545 | ProteinID:CDY19545 |
| ProteinID:CDY19545.1 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00009182001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF100 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI0004EEF189 | SEG:seg |
Description
BnaC09g13580DBnaC09g13580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYY6]
Coordinates
chrLK032097:-:479044..482082
Molecular Weight (calculated)
43202.0 Da
IEP (calculated)
6.706
GRAVY (calculated)
-0.688
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS HHQHSSLLFL QSLTPPSQEA KNKVRSSCSP SSGAPAYSFM
101: EINHQNELLA GGLNPCSSAS VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ HVECQFKSLS LSSPSSFSVG YGEAAIERNN NGSSEEEVDM NNEFVDPQAE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL
301: LDWWSRHYKW PYPSEQQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP HHYFMDNVMG NPFPIDHISS TML
101: EINHQNELLA GGLNPCSSAS VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ HVECQFKSLS LSSPSSFSVG YGEAAIERNN NGSSEEEVDM NNEFVDPQAE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL
301: LDWWSRHYKW PYPSEQQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP HHYFMDNVMG NPFPIDHISS TML
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.