CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX80491
CDX80798
CDX83145
CDX88165
CDY10473
CDY12943
CDY13472
CDY19545
CDY34012
CDY40327
CDY48107
CDY55113
CDY68624
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	CDY12943	AT1G62360.1	12897247
AT5G02030.1	CDY19545	AT1G62360.1	12897247
AT5G02030.1	CDY12943	AT1G62360.1	15019989
AT5G02030.1	CDY19545	AT1G62360.1	15019989
AT5G02030.1	CDY12943	AT1G62360.1	15781858
AT5G02030.1	CDY19545	AT1G62360.1	15781858
AT5G02030.1	CDY12943	AT1G62360.1	16513846
AT5G02030.1	CDY19545	AT1G62360.1	16513846
AT5G02030.1	CDX83145	AT4G08150.1	12897247
AT5G02030.1	CDY34012	AT4G08150.1	12897247
AT5G02030.1	CDY68624	AT4G08150.1	12897247
AT5G02030.1	CDX83145	AT4G08150.1	15019989
AT5G02030.1	CDY34012	AT4G08150.1	15019989
AT5G02030.1	CDY68624	AT4G08150.1	15019989
AT5G02030.1	CDX83145	AT4G08150.1	15781858
AT5G02030.1	CDY34012	AT4G08150.1	15781858
AT5G02030.1	CDY68624	AT4G08150.1	15781858
AT5G02030.1	CDX68812	AT4G32040.1	15781858
AT5G02030.1	CDX72343	AT4G32040.1	15781858
AT5G02030.1	CDX75215	AT4G32040.1	15781858
AT5G02030.1	CDY13472	AT4G32040.1	15781858
AT5G02030.1	CDX80798	AT5G02030.1	15781858
AT5G02030.1	CDY10473	AT5G02030.1	15781858
AT5G02030.1	CDY40327	AT5G02030.1	15781858
AT5G02030.1	CDY48107	AT5G02030.1	15781858
AT5G02030.1	CDY55113	AT5G02030.1	15781858
AT5G02030.1	CDY69132	AT5G02030.1	15781858
AT5G02030.1	CDX80491	AT5G25220.1	15781858
AT5G02030.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40327	Canola	nucleus	98.09	97.58
AT5G02030.1	Thale cress	nucleus	86.61	86.61
CDY48107	Canola	nucleus	85.91	85.91
CDY69132	Canola	nucleus	85.04	85.19
CDY55113	Canola	nucleus	77.39	85.09
CDX80798	Canola	nucleus	77.39	83.65
Solyc10g086640.1.1	Tomato	nucleus	24.7	55.04
GSMUA_Achr10P...	Banana	nucleus	9.74	54.9
Solyc09g011380.2.1	Tomato	nucleus	42.09	48.02
PGSC0003DMT400062353	Potato	nucleus	41.39	47.13
KRH00065	Soybean	nucleus	46.96	47.12
KRH75724	Soybean	nucleus	48.87	46.14
VIT_08s0007g01290.t01	Wine grape	nucleus	51.3	45.95
HORVU3Hr1G072010.1	Barley	mitochondrion	10.09	45.31
KRH65931	Soybean	nucleus	48.0	44.73
GSMUA_Achr10P...	Banana	plastid	7.3	43.3
CDX83753	Canola	nucleus	14.09	42.63
PGSC0003DMT400049235	Potato	nucleus	41.22	41.22
GSMUA_Achr7P14960_001	Banana	nucleus	30.43	39.77
TraesCS1D01G280300.1	Wheat	nucleus	37.57	37.7
TraesCS1B01G290200.1	Wheat	nucleus	37.91	37.59
TraesCS1A01G281100.1	Wheat	nucleus	37.39	37.46
Os05t0455200-01	Rice	nucleus	37.22	36.9
EES18336	Sorghum	nucleus	36.35	36.67
Os01t0848400-01	Rice	nucleus	38.43	36.11
Zm00001d038355_P001	Maize	nucleus	35.83	35.76
Zm00001d042864_P002	Maize	nucleus	36.17	35.43
EES03882	Sorghum	nucleus	36.35	35.24
Zm00001d010060_P001	Maize	nucleus	34.61	34.73
CDY21826	Canola	extracellular, plastid	5.74	34.38
GSMUA_Achr5P07020_001	Banana	nucleus	30.96	33.9
TraesCS3B01G396100.1	Wheat	nucleus	36.17	33.55
TraesCS3D01G357400.1	Wheat	nucleus	36.17	33.39
TraesCS3A01G363900.1	Wheat	nucleus	36.17	33.12
CDY47523	Canola	nucleus	16.52	32.87
CDX73171	Canola	nucleus	16.52	32.87
CDY45383	Canola	nucleus	14.78	32.32
CDY29411	Canola	nucleus	20.87	30.85
CDY02261	Canola	nucleus	22.61	28.95
CDX89711	Canola	nucleus	22.61	28.57
CDY52073	Canola	nucleus	22.96	28.03
CDX75307	Canola	nucleus	10.78	27.93
CDY46209	Canola	nucleus	18.26	27.78
CDY39031	Canola	nucleus	22.96	27.62
HORVU1Hr1G072850.1	Barley	nucleus, plastid	38.09	27.58
CDY63699	Canola	nucleus	19.65	27.03
CDY30566	Canola	nucleus	20.87	26.79
CDX77099	Canola	nucleus	20.35	26.06
CDX68129	Canola	nucleus	21.39	26.0
CDX73170	Canola	nucleus	22.78	25.49
CDY47524	Canola	nucleus	22.61	25.19
CDX71279	Canola	nucleus	16.87	25.0
CDY39359	Canola	nucleus	22.43	24.86
CDX76849	Canola	nucleus	25.91	24.79
CDX96653	Canola	nucleus	21.74	24.7
CDY44476	Canola	nucleus	24.35	24.65
CDY46061	Canola	nucleus	25.91	24.51
CDX85896	Canola	nucleus	21.04	24.06
CDY32069	Canola	nucleus	26.43	23.9
CDY40420	Canola	nucleus	26.26	23.89
CDY39669	Canola	nucleus	26.61	23.72
CDX84171	Canola	nucleus	24.17	23.64
CDY62523	Canola	nucleus	26.26	23.3
CDX69252	Canola	nucleus	26.96	23.24
CDX75604	Canola	nucleus	26.96	23.17
CDY24765	Canola	nucleus	26.61	22.94
CDY22463	Canola	nucleus	26.43	22.69
CDX84585	Canola	nucleus	25.91	22.21
CDX75085	Canola	nucleus	24.0	21.97
HORVU3Hr1G085720.1	Barley	nucleus, plastid	28.7	21.91
CDX79646	Canola	nucleus	26.09	21.71
CDY13511	Canola	nucleus	13.57	17.85
CDX75313	Canola	nucleus	14.43	17.81
CDY45321	Canola	nucleus, plastid	20.7	17.37
CDX68927	Canola	nucleus	13.91	17.35
CDX72383	Canola	nucleus	13.22	16.81
CDX68925	Canola	cytosol	3.65	11.6
CDX68906	Canola	nucleus	4.0	8.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078FED5	UniProt:A0A078FED5	EnsemblPlants:CDY10473	ProteinID:CDY10473
ProteinID:CDY10473.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00032402001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF82	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0004EF2D9A
SEG:seg	:	:	:	:	:

Description

BnaCnng03740DBnaCnng03740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FED5]

Coordinates

chrLK032003:-:685525..689108

Molecular Weight (calculated)

62159.2 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.484

Length

575 amino acids

Sequence
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HHPHPPSSSG GGAGVYPLGD SDYLAAGGFH SNNNSHISNP SYSNFMGFLG GPSSSSSNAV AVAGDHSFHD
101: GLSSGDVLVF KPEPLSLSLS SHPRLTYDLV VPGVVNSGFG RSAAEAAAAT VTVASRSSGP LGPFTGYASI LKGSRFLKPA QILLDEFCNV GHGIYTDKNI
201: DEDDSSLLFD PTVESLCGTS DSGGGEYMKN KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YASLTLKALS RHFKCLKNAI TEQLQLSTNN
301: KIQQQQSGHL MISENRTESM RFGGSDSSRG LCSAGQRHGF PDNHAPVWRP HRGLPERAVT VLRAWLFDHF LHPYPTDTDK LMLAKQTGLS RNQVSNWFIN
401: ARVRVWKPMV EEIHMLETRQ SQRSSSWRDE RNTTTVFPDN NNPSSSTAQQ RANNNSSPAR RVQNDDVHGT TTNNNSNNFM NAGNSGSGGA VAFSYGIASS
501: NVAGMSSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLE GGSSGGGGGS YVQNRQFGRD FIGGSNPQFL HDFVG

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.