Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02013 | Soybean | nucleus | 71.55 | 96.28 |
| KRH73380 | Soybean | nucleus | 13.81 | 76.92 |
| KRH36506 | Soybean | nucleus | 79.01 | 75.46 |
| KRH11492 | Soybean | nucleus | 77.9 | 75.2 |
| VIT_10s0116g00190.t01 | Wine grape | nucleus | 70.99 | 73.43 |
| PGSC0003DMT400043083 | Potato | nucleus | 62.15 | 65.6 |
| Solyc02g081120.2.1 | Tomato | nucleus | 62.43 | 63.84 |
| AT1G62360.1 | Thale cress | nucleus | 64.64 | 61.26 |
| KRH14756 | Soybean | nucleus | 53.59 | 59.69 |
| CDY19545 | Canola | nucleus | 62.98 | 59.53 |
| Bra027050.1-P | Field mustard | nucleus | 62.71 | 59.42 |
| CDY12943 | Canola | nucleus | 62.71 | 59.27 |
| KRG99390 | Soybean | nucleus | 20.17 | 55.73 |
| KRH33819 | Soybean | nucleus | 35.36 | 43.24 |
| KRH69600 | Soybean | nucleus | 36.46 | 42.86 |
| KRH74562 | Soybean | nucleus | 35.91 | 42.07 |
| KRH61471 | Soybean | nucleus | 41.44 | 41.55 |
| KRH45633 | Soybean | nucleus | 36.19 | 40.81 |
| KRG90534 | Soybean | nucleus | 34.53 | 40.72 |
| KRH63561 | Soybean | nucleus | 31.22 | 40.65 |
| KRH73381 | Soybean | cytosol | 25.41 | 40.0 |
| KRG88661 | Soybean | nucleus | 41.71 | 39.02 |
| KRH15482 | Soybean | nucleus | 41.44 | 38.96 |
| KRG96717 | Soybean | nucleus | 32.87 | 38.26 |
| KRH68434 | Soybean | nucleus | 32.32 | 38.11 |
| KRG99387 | Soybean | nucleus | 16.02 | 30.21 |
| KRH77464 | Soybean | nucleus | 20.99 | 27.05 |
| KRH27981 | Soybean | nucleus | 20.72 | 26.88 |
| KRH03996 | Soybean | nucleus | 20.99 | 26.03 |
| KRH57265 | Soybean | nucleus | 20.99 | 25.94 |
| KRH20116 | Soybean | nucleus | 23.48 | 24.57 |
| KRH03552 | Soybean | nucleus | 23.2 | 24.35 |
| KRH37876 | Soybean | nucleus | 23.48 | 23.04 |
| KRH12889 | Soybean | nucleus | 23.48 | 22.97 |
| KRH52385 | Soybean | nucleus | 23.76 | 21.61 |
| KRH15810 | Soybean | nucleus | 24.03 | 21.12 |
| KRH61712 | Soybean | nucleus | 23.76 | 20.92 |
| KRH05245 | Soybean | nucleus | 23.48 | 20.68 |
| KRG98594 | Soybean | extracellular | 4.14 | 18.29 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100127401 | MapMan:15.5.3.4 | UniProt:A7J0W0 | EMBL:ACUP02004729 | EMBL:DQ857339 |
| InterPro:ELK_dom | EnsemblPlantsGene:GLYMA_07G263600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 |
| InterPro:KNOX2 | EnsemblPlants:KRH51140 | ProteinID:KRH51140 | ProteinID:KRH51140.1 | PFAM:PF03789 | PFAM:PF03790 |
| PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 |
| PANTHER:PTHR11850:SF100 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 |
| UniParc:UPI000159BF52 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:43790103..43795650
Molecular Weight (calculated)
40818.5 Da
IEP (calculated)
6.654
GRAVY (calculated)
-0.635
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAMEGVI SSKGMGFGEN TSSSGVCPMM MMPLVTSHHV GHHPLNHPIL NNPNPNEHTN TLFLPMPCTN NNHHPNRNNH NSNATELGYF MEIPNNNNDG
101: SSSSPSSAVK AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVG RLEEACASAA VIMAGGTASI GEDPALDQFM EAYCEMLIKY EQELSKPFKE AMLFLQRIEC
201: QFKSLTISSS LDTTACNEAI DRNGPSEDVD VQTNIIDPQA EDQELKGQLL RKYRGYLGSL KQEFTKKRKK GKLPKEARQQ LLEWWSRHYK WPYPSESQKL
301: ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVVDPSH PHYYMENVLG NPFPMDLSHP ML
101: SSSSPSSAVK AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVG RLEEACASAA VIMAGGTASI GEDPALDQFM EAYCEMLIKY EQELSKPFKE AMLFLQRIEC
201: QFKSLTISSS LDTTACNEAI DRNGPSEDVD VQTNIIDPQA EDQELKGQLL RKYRGYLGSL KQEFTKKRKK GKLPKEARQQ LLEWWSRHYK WPYPSESQKL
301: ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVVDPSH PHYYMENVLG NPFPMDLSHP ML
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.