Factsheet for Os02t0226600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0182800-01
Os03t0123500-02
Os06t0646600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	Os03t0123500-02	AT1G62990.1	15781858
AT4G32980.1	Os02t0182800-01	AT5G11060.1	15781858
AT4G32980.1	Os06t0646600-01	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04785	Sorghum	nucleus	60.67	57.98
Zm00001d016298_P001	Maize	nucleus	58.81	57.85
Zm00001d002249_P001	Maize	nucleus	33.21	50.85
CDX75307	Canola	nucleus	17.25	41.89
Os06t0562300-00	Rice	nucleus	42.3	41.83
Bra011403.1-P	Field mustard	nucleus	23.56	27.25
CDX75313	Canola	nucleus	23.56	27.25
AT4G32980.1	Thale cress	nucleus	23.56	26.85
KRH52190	Soybean	nucleus	27.27	26.78
CDY13511	Canola	nucleus	21.71	26.77
CDX68927	Canola	nucleus	22.82	26.68
Bra037031.1-P	Field mustard	nucleus	21.52	26.54
KRH05496	Soybean	nucleus	27.83	26.27
KRH61499	Soybean	nucleus	27.83	26.09
GSMUA_Achr2P19430_001	Banana	nucleus	25.97	25.88
VIT_04s0008g00880.t01	Wine grape	nucleus	28.01	25.64
GSMUA_AchrUn_...	Banana	nucleus	28.01	25.46
CDX72383	Canola	nucleus	21.15	25.22
PGSC0003DMT400076995	Potato	nucleus	25.23	25.19
Os03t0680700-00	Rice	nucleus	15.58	24.28
Solyc08g065420.2.1	Tomato	nucleus	24.86	23.97
CDX68925	Canola	cytosol	7.61	22.65
Os11t0158600-00	Rice	nucleus	14.66	18.81
Os05t0455200-01	Rice	nucleus	18.0	16.72
Os03t0165300-02	Rice	endoplasmic reticulum, vacuole	18.92	16.64
Os06t0108900-02	Rice	nucleus	15.96	16.23
Os10t0534900-01	Rice	nucleus	17.63	16.21
Os12t0636200-01	Rice	nucleus	19.3	16.07
Os01t0848400-01	Rice	nucleus	18.0	15.85
Os03t0680800-02	Rice	nucleus	19.67	15.7
Os03t0124000-01	Rice	nucleus	17.07	15.57
CDX68906	Canola	nucleus	7.05	14.67
Os03t0732100-01	Rice	nucleus	21.15	14.43
Os11t0158832-00	Rice	nucleus	5.75	11.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EntrezGene:4328784	ProteinID:BAD25657.1	ProteinID:BAF08260.1	ProteinID:BAS77740.1
ProteinID:EEE56592.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	EnsemblPlantsGene:Os02g0226600	EnsemblPlants:Os02t0226600-01	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF119	UniProt:Q6H6J2	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI00003B4506	RefSeq:XP_015624855.1	SEG:seg	:	:

Description

Homeodomain-related domain containing protein. (Os02t0226600-01)

Coordinates

chr2:+:7097062..7100301

Molecular Weight (calculated)

55537.9 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.149

Length

539 amino acids

Sequence
(BLAST)

001: MSGNPSFSQL GAVDAAMNGG YFMAASGNGA DVPLFHPAMA PPHDHGGSFG YGDAAAAAMD VGAHFAAANN LVLASLATQL FGAAPAAAAH GHGDYLGATT
101: PPEEEMGGGY DVAVGDSSGG AVSLACLGHG QPGDMAAGWC STSARKPSCN WSSSNAGVHG GSYYLAGVPE AAGFVSAAAA ASELSLSLCS KSSSDSMLNA
201: GGDQCSSAAS RSGLTQMSRV VVVEPEPPLV PYYPAANFAV VVARSRYAAV AQQVLNDAVG CVLGGVADAA ADSASGVDSG SSRPSSCSVA GGAPSSAVSS
301: NNQLIASSGE HTHGGGDASA QRLRSELLTM LQLMDQKYNQ CLDEIQSTTA RFNTLTHATA RAAGMSSSSI CAPFAHRAVS AMYHGLRRRI AGEIMSAAAA
401: AGRPCRGGES SSAVTGGERE RSWESAFIQK HWAVQQLRRG EQQCWRPQRG LPEKSVAVLK AWMFENFLRP YPKDSEKEML AARSGLSRNQ VSNWFINARV
501: RLWKPMIEEM CEELKRSSGG GAGNQALAME HMNSQDVVS

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.