Factsheet for VIT_13s0019g02450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G072010.1	Barley	mitochondrion	10.84	42.19
GSMUA_Achr10P...	Banana	plastid	7.23	37.11
GSMUA_Achr10P...	Banana	nucleus	7.03	34.31
VIT_08s0007g01290.t01	Wine grape	nucleus	38.96	30.22
GSMUA_Achr7P14960_001	Banana	nucleus	26.31	29.77
VIT_18s0001g11800.t01	Wine grape	nucleus	20.68	29.51
TraesCS1D01G280300.1	Wheat	nucleus	32.13	27.92
EES18336	Sorghum	nucleus	31.53	27.54
TraesCS1A01G281100.1	Wheat	nucleus	31.73	27.53
TraesCS1B01G290200.1	Wheat	nucleus	31.93	27.41
Os05t0455200-01	Rice	nucleus	31.73	27.24
Zm00001d038355_P001	Maize	nucleus	30.92	26.74
Zm00001d010060_P001	Maize	nucleus	30.32	26.35
Zm00001d042864_P002	Maize	nucleus	30.92	26.24
EES03882	Sorghum	nucleus	31.12	26.14
Os01t0848400-01	Rice	nucleus	30.72	25.0
GSMUA_Achr5P07020_001	Banana	nucleus	25.9	24.57
TraesCS3B01G396100.1	Wheat	nucleus	29.52	23.71
VIT_18s0001g13130.t01	Wine grape	nucleus	22.29	23.62
TraesCS3D01G357400.1	Wheat	nucleus	29.52	23.6
VIT_02s0025g00200.t01	Wine grape	nucleus	30.52	23.53
TraesCS3A01G363900.1	Wheat	nucleus	29.52	23.41
VIT_08s0105g00230.t01	Wine grape	nucleus	27.11	21.63
VIT_03s0038g00050.t01	Wine grape	nucleus	29.12	20.98
VIT_06s0009g00410.t01	Wine grape	nucleus	30.32	20.74
VIT_06s0004g02580.t01	Wine grape	nucleus	30.92	20.53
HORVU1Hr1G072850.1	Barley	nucleus, plastid	31.73	19.9
VIT_18s0001g13150.t01	Wine grape	nucleus	25.5	18.19
VIT_04s0023g01020.t01	Wine grape	nucleus	29.92	17.61
VIT_04s0008g00880.t01	Wine grape	nucleus	20.48	17.32
HORVU3Hr1G085720.1	Barley	nucleus, plastid	24.5	16.2

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261625	wikigene:100261625	MapMan:15.5.3.5	EMBL:AM484190	ProteinID:CAN73118
ProteinID:CAN73118.1	ProteinID:CCB56300	ProteinID:CCB56300.1	UniProt:F6HNT1	EMBL:FN595998	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100261625
wikigene:LOC100261625	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF150	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI00015C9647	ArrayExpress:VIT_13s0019g02450
EnsemblPlantsGene:VIT_13s0019g02450	EnsemblPlants:VIT_13s0019g02450.t01	RefSeq:XP_002277603	RefSeq:XP_002277603.1	RefSeq:XP_010658510.1	:

Description

No Description!

Coordinates

chr13:-:3701110..3706090

Molecular Weight (calculated)

55834.7 Da

IEP (calculated)

9.269

GRAVY (calculated)

-0.576

Length

498 amino acids

Sequence
(BLAST)

001: MADSHQPFRL PQQSKRENPR LFLQNNHPQL FSTFQHAPVH QLHCPDQNPN PAGFVNSEGV HVVGPSSASF SFPSCGDHSL SSIHNAKDLD HRFSFGADAV
101: SLSLAPHHRH QRCAPLELNA KRYDVVSVRG GTPKPNNELR SSVPLGPFTG YASILKRSSF LSPAQQLLDD FCGVGRGVSD SASFDPPLEG SGTAEDPIGC
201: SHGSEHFWKS SRLAPMLDEV YRRYKLYCQQ MHSVVASFET VAGLQNAAPY ISFAFKAMSN HFRYLKNAIL DQIQFTGKAL VGHNIGKDET PRVWTADQGF
301: HSQKAVQSSM FLQHPIWRSQ RGLPDHAVAV LRAWLFEHFL HPYPTDLEKQ ILAQRTSLSR NQVSNWFINA RVRLWKPMVE EILTLETKQA QMAAEGEANK
401: PTDPLPSANP LPLRKPFQNT PTQKMEDTQS KRSRNKLSYM FEQRDEQTNF PYNNFSSNYQ MGVSGIEKSA SKGISLALGL HQNNRIESST SFFQPGNK

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.