CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH61471
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27990.1	KRH16959	AT3G49580.1	21798944
AT2G27990.1	KRH53667	AT3G49580.1	21798944
AT2G27990.1	KRH64261	AT3G49580.1	21798944
AT2G27990.1	KRH61471	AT4G08150.1	15781858
AT2G27990.1	KRH16959	AT5G24660.1	21798944
AT2G27990.1	KRH53667	AT5G24660.1	21798944
AT2G27990.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25064	Soybean	nucleus	89.84	90.79
KRH26495	Soybean	nucleus	58.07	56.17
KRH22860	Soybean	nucleus	57.16	55.85
GSMUA_Achr11P...	Banana	plastid	18.62	54.37
Solyc11g069890.1.1	Tomato	golgi	32.68	43.28
PGSC0003DMT400020825	Potato	nucleus	37.5	41.62
VIT_06s0004g02580.t01	Wine grape	nucleus	39.71	40.67
AT2G27990.1	Thale cress	nucleus	25.13	33.05
KRH00065	Soybean	nucleus	23.7	31.76
GSMUA_Achr10P...	Banana	nucleus	29.95	30.5
KRH26689	Soybean	nucleus	20.31	30.17
KRH75724	Soybean	nucleus	23.83	30.05
KRH65931	Soybean	nucleus	23.57	29.34
KRH61118	Soybean	nucleus	16.41	28.64
KRH51793	Soybean	nucleus	16.41	28.19
KRH59951	Soybean	nucleus	23.18	28.03
KRH28575	Soybean	nucleus	25.13	27.38
KRH41225	Soybean	nucleus	22.92	27.24
KRH76894	Soybean	nucleus	25.0	27.04
KRH69971	Soybean	nucleus	23.57	26.85
KRH27902	Soybean	nucleus	22.4	26.79
KRH77572	Soybean	nucleus	22.4	26.63
KRH51485	Soybean	nucleus	19.27	26.62
KRH32854	Soybean	nucleus	22.53	26.17
KRH22635	Soybean	nucleus	23.57	25.78
KRH72182	Soybean	nucleus	22.27	25.75
KRH68008	Soybean	nucleus	22.66	25.63
KRH05875	Soybean	nucleus	20.18	25.37
KRG96259	Soybean	nucleus	22.4	25.29
KRH08329	Soybean	nucleus	25.26	24.97
KRH51792	Soybean	nucleus	20.44	24.65
KRH61114	Soybean	nucleus	20.7	24.61
KRH15136	Soybean	nucleus	20.18	24.37
KRH60794	Soybean	nucleus	20.96	24.32
KRH25319	Soybean	nucleus	23.44	24.29
KRG88864	Soybean	nucleus	23.44	23.56
KRH52190	Soybean	nucleus	15.23	21.31
KRH61499	Soybean	nucleus	14.84	19.83
KRH05496	Soybean	nucleus	14.58	19.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100810379	MapMan:15.5.3.5	EMBL:ACUP02007043	EnsemblPlantsGene:GLYMA_11G196300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7LQD5
EnsemblPlants:KRH30618	ProteinID:KRH30618	ProteinID:KRH30618.1	ProteinID:KRH30619.1	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF125	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI0002967AAF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:27035569..27043022

Molecular Weight (calculated)

85738.9 Da

IEP (calculated)

7.244

GRAVY (calculated)

-0.756

Length

768 amino acids

Sequence
(BLAST)

001: MSSLRPELHV AQQLRRDKLR IQNSSQQQHL QEFPNNLEQL SLQPGFNLDL LQVRSVRNGN MLDEALYSSE MITFPNPLSA PRNPLECQEL MMVQYGSTSF
101: PHSSSPKEQQ CEPRNLGASW MLNCNNSSSS NNNNSNNSLY SSELNNNVSS EMANREIQKQ FGEMQYPPSS SSSSPIYHNA LQDMAYGVWG GNNHHGESVL
201: HYGNNELRIG GANLWTHNNN NIPLGFKKIN NDEQLHDRNH THQGLSLSLS SNSQQQQSKP CFDEGSVVKS PSSTMKLNAL SNNNNNTVYR NVGPLGPFTG
301: YATILKSSRF LRPCQQLLDE WCCQSGSKFA KRGICDVPEW VSRDVSSAST CATALNVDES AAKGGGNSGA SSSVLYCSIE NNNNNNNNNN NNNNNNNNSA
401: DGGAASSFCL SSRPECQKNK AKLLYMQEEV TRRYKQYHQQ MQMVVQSFES VAGLSLATPY VSLALKSVSK HFRCLKNAIS DQLKLTCEVL GEDFSIPTTS
501: TGSKFDNNMA RLRCMDQSFQ KNKSGGANIN FLEPQQHVWR PQRGLPERSV AILKAWLFEH FLHPYPTDTD KHMLATQTGL SRNQVSNWFI NARVRVWKPM
601: VEEIHMLETK GVTTEARQHH QTSSKNDQLA SASEGSNNQP KSDNQPAHRF GGAHASHSHA IPEKQFQCLE MGSSSSACNE EQIGMEEDQW NQEKRSKLDC
701: QITTTTPSMD GTVMGFMPYR RSGLEGLGSV SLTLGLRHGV EGVQQQQLQQ EEELRRQFGG HMIYDFVG

Best Arabidopsis Sequence Match ( AT2G23760.1 )
(BLAST)

001: MGLATTTSSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVVSGAQI PVYETAGMLS EMFAYPGGGG GGSGGEILDQ STKQLLEQQN RHNNNNNSTL
101: HMLLPNHHQG FAFTDENTMQ PQQQQHFTWP SSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY RSIYCAAVDG TSSSSNASAH HHQFNQFKNL
201: LLENSSSQHH HHQVVGHFGS SSSSPMAASS SIGGIYTLRN SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTTGGG GGGGSSSSAG TANDSPPLSP
301: ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR
401: LRLLEQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEREE
501: AEEENENQQQ QRRQQQTNNN DTKPNNNENN FTVITAQTPT TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI RFGTKQTGDV
601: SLTLGLRHSG NIPDKNTSFS VRDFGDF

Arabidopsis Description

BLH4BEL1-like homeodomain 4 [Source:TAIR;Acc:AT2G23760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.