CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96259	Soybean	nucleus	95.14	95.0
KRH32854	Soybean	nucleus	74.52	76.55
KRH72182	Soybean	nucleus	74.52	76.2
VIT_08s0105g00230.t01	Wine grape	nucleus	57.44	62.5
KRH26689	Soybean	nucleus	44.77	58.8
PGSC0003DMT400054945	Potato	nucleus	58.17	56.11
Solyc01g007070.2.1	Tomato	nucleus	57.73	56.0
CDY32069	Canola	nucleus	51.25	54.72
CDY40420	Canola	nucleus	50.81	54.59
Bra017277.1-P	Field mustard	nucleus	53.9	54.22
AT2G35940.3	Thale cress	nucleus	53.76	53.68
CDX84585	Canola	nucleus	53.02	53.65
CDX84171	Canola	nucleus	45.95	53.06
KRH22635	Soybean	nucleus	54.2	52.42
CDX75085	Canola	nucleus	48.45	52.39
Bra005310.1-P	Field mustard	nucleus	48.31	52.23
CDX79646	Canola	nucleus	53.02	52.1
Bra023045.1-P	Field mustard	nucleus	48.16	50.08
Os11t0158600-00	Rice	nucleus	29.31	47.38
KRH25319	Soybean	nucleus	50.81	46.56
KRG88864	Soybean	nucleus	51.25	45.55
Zm00001d053151_P003	Maize	nucleus	42.42	42.92
TraesCS4B01G114600.1	Wheat	nucleus	41.83	42.9
TraesCS4D01G111900.1	Wheat	nucleus	41.83	42.77
TraesCS4A01G200800.1	Wheat	nucleus	41.83	42.77
EES09309	Sorghum	nucleus	42.12	41.45
HORVU4Hr1G020710.1	Barley	nucleus	31.66	41.35
GSMUA_Achr2P06410_001	Banana	nucleus	8.25	38.62
Os11t0158832-00	Rice	nucleus	14.58	37.64
KRH61118	Soybean	nucleus	23.42	36.14
KRH51793	Soybean	nucleus	23.27	35.35
KRH51485	Soybean	nucleus	27.69	33.81
KRH60794	Soybean	nucleus	32.11	32.93
KRH05875	Soybean	nucleus	28.72	31.91
KRH51792	Soybean	nucleus	29.6	31.55
KRH15136	Soybean	nucleus	29.46	31.45
KRH61114	Soybean	nucleus	29.46	30.96
KRH00065	Soybean	nucleus	25.04	29.67
KRH27902	Soybean	nucleus	27.84	29.44
KRH77572	Soybean	nucleus	27.98	29.41
KRH41225	Soybean	nucleus	27.25	28.64
KRH59951	Soybean	nucleus	26.21	28.03
KRH75724	Soybean	nucleus	24.45	27.26
KRH65931	Soybean	nucleus	24.59	27.07
KRH28575	Soybean	nucleus	27.98	26.95
KRH76894	Soybean	nucleus	27.69	26.48
KRH69971	Soybean	nucleus	25.18	25.37
KRH08329	Soybean	nucleus	28.13	24.58
KRH52190	Soybean	nucleus	19.15	23.68
KRH25064	Soybean	nucleus	25.92	23.16
KRH30618	Soybean	nucleus	25.63	22.66
KRH61499	Soybean	nucleus	18.56	21.91
KRH26495	Soybean	nucleus	25.33	21.66
KRH22860	Soybean	nucleus	24.59	21.25
KRH05496	Soybean	nucleus	17.82	21.19

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100797418	MapMan:15.5.3.5	EMBL:ACUP02002096	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G202300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1JQ89
InterPro:IPR001356	ProteinID:KRH68007.1	EnsemblPlants:KRH68008	ProteinID:KRH68008	ProteinID:KRH68008.1	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF135	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI00023397A4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:41073606..41078298

Molecular Weight (calculated)

73974.5 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.685

Length

679 amino acids

Sequence
(BLAST)

001: MATYFHHGNS EIQSGGADGL QTLVLMNPGY IHYSDAPPPQ QQTSQTAGNL VFLNPAAVAG GNNNSFNPHA PPSHTQQFVG IPLPNSQDLN HHSMHAHHDV
101: SALHGFLPRM QYNPWNALDP ALAARENPRA QQGLSLGLGS FREGQAPAMS GDDLRISGGS PSSASGVTNN GASGIQSVLL SSKYLKAAHE LLEEVVNVNN
201: GIGTELGKKR GGQNKVVGES SAAGSGDGSV GGEGNGKRSS ELSTAERQEI QMKKAKLIGM LDEVEQRYRQ YHQQMEIVGS SFEQAAGIGS ARTYTALALQ
301: TISKQFRCLK DAIAGQVRTA NKSLGEEDCF GGKMEGSRLK YVDHHLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK
401: QTGLTRSQVS NWFINARVRL WKPMVEEMYT EEMKDHEQNR SEDKSSKSNE DSASKMSAPQ DKGPSNETEA KSFNSKHEVS KSQNTAMVSV SRPSTSPLGV
501: NVRSQSGFSF MGSSELDGIT QGSPKKPRNH EMMHSPNSVP SMSMDVKPND ENNEQLSMKF GVERQGRNES SFMGNQTNFN GGFGQYPIGD IGRFDTEQFT
601: PRLSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE PNEFGAISTS SPHSTAAYES ISMQNPKRFA AQLLPDFVT

Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)

001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA

Arabidopsis Description

BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.