CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH61471
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27990.1	KRH16959	AT3G49580.1	21798944
AT2G27990.1	KRH53667	AT3G49580.1	21798944
AT2G27990.1	KRH64261	AT3G49580.1	21798944
AT2G27990.1	KRH61471	AT4G08150.1	15781858
AT2G27990.1	KRH16959	AT5G24660.1	21798944
AT2G27990.1	KRH53667	AT5G24660.1	21798944
AT2G27990.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26495	Soybean	nucleus	89.57	88.67
KRH25064	Soybean	nucleus	56.62	58.55
KRH30618	Soybean	nucleus	55.85	57.16
GSMUA_Achr11P...	Banana	plastid	18.45	55.13
VIT_06s0004g02580.t01	Wine grape	nucleus	42.37	44.4
Solyc11g069890.1.1	Tomato	golgi	31.17	42.24
PGSC0003DMT400020825	Potato	nucleus	36.13	41.04
AT2G27990.1	Thale cress	nucleus	24.05	32.36
GSMUA_Achr10P...	Banana	nucleus	30.53	31.83
KRH00065	Soybean	nucleus	22.77	31.24
KRH75724	Soybean	nucleus	23.66	30.54
KRH65931	Soybean	nucleus	23.79	30.31
KRH59951	Soybean	nucleus	22.9	28.35
KRH61118	Soybean	nucleus	15.78	28.18
KRH26689	Soybean	nucleus	18.45	28.05
KRH51793	Soybean	nucleus	15.78	27.74
KRH27902	Soybean	nucleus	22.65	27.73
KRH77572	Soybean	nucleus	22.65	27.55
KRH41225	Soybean	nucleus	22.52	27.4
KRH28575	Soybean	nucleus	24.05	26.81
KRH76894	Soybean	nucleus	24.05	26.62
KRH69971	Soybean	nucleus	22.14	25.82
KRH72182	Soybean	nucleus	21.76	25.75
KRH32854	Soybean	nucleus	21.37	25.42
KRH05875	Soybean	nucleus	19.72	25.37
KRH61114	Soybean	nucleus	20.74	25.23
KRH51485	Soybean	nucleus	17.81	25.18
KRH51792	Soybean	nucleus	20.36	25.12
KRH15136	Soybean	nucleus	20.1	24.84
KRH68008	Soybean	nucleus	21.25	24.59
KRH08329	Soybean	nucleus	24.17	24.45
KRH60794	Soybean	nucleus	20.36	24.17
KRH22635	Soybean	nucleus	21.5	24.07
KRG96259	Soybean	nucleus	20.74	23.97
KRH25319	Soybean	nucleus	22.01	23.35
KRG88864	Soybean	nucleus	21.63	22.25
KRH52190	Soybean	nucleus	14.89	21.31
KRH61499	Soybean	nucleus	14.76	20.17
KRH05496	Soybean	nucleus	14.63	20.14

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809720	MapMan:15.5.3.5	EMBL:ACUP02008439	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G324200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K7M356	ProteinID:KRH22859.1	EnsemblPlants:KRH22860	ProteinID:KRH22860	ProteinID:KRH22860.1	ProteinID:KRH22861.1
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF125
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000233AC2A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:41891780..41899459

Molecular Weight (calculated)

86405.1 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.555

Length

786 amino acids

Sequence
(BLAST)

001: MSNLRPESHV AQQIRREKLR IQNSYQPSHE FPNNLEQLSL HPGFNNLDLV QVRNVRNANM LDELAVYSSE MPNFSTSSSA ARNALEYHQE QGAAAEPSNR
101: LLLMNQYGSF PHSMSAIHSS HKQQCELRNL GNWRNSTPHQ GSDWFVNYAS NANSFLSAEL NNNVSAYNEL MDVHCSNASG EISGREMHKQ GVLHHNSPPS
201: SPLYQNALQD IVKSASFSAH TRQDMASLMQ QNEHSIWVGN ASEAELQQPS YESQPNHELR FGWTNRTIAC DSLPQSLSLS LSSNAQPKPS VSHLEQGSAS
301: DDPQCLKHMK SIVSRDCGKS VQDQVEIPSK STTTITYRSV GPLGPFTGYA TILKSSRFLK SAQQLLDEIC CLSDAKFGKS YDVSKRVSPE VSASTSADTV
401: TGVAAKGSNS GSSSTTLYNV SKENRADPGV GSSFGLSSRS DYQHKKAKLL YMQEEVSRQC KQYHLQMQMV VSSFESVAGL GSATPYIPMA LKSVSKHFRC
501: LKNSISDQLK LISEALGEDL SIPCSTSTCS NKADTTTMAR VRCGSSMDQS FFLKNKCVKG TTELLDEPPQ QHVWRPQRGL PERAVAILKA WLFEHFLHPY
601: PTDTDKHMLA SQTGLSRNQV SNWFINARVR VWKPMVEEIH TLETKATGSK DNCGINEGTS SATGGDTSHP RALGNIGLNS IPETQFQGID MGSSIAANAE
701: ESGLNPEQWS QEKRSKLECQ VTSTMDGTLM GFVPYRHGGV EVGGLGSVSL TLGLSHGVEG VQNQQQLQEE QLRHDVGGHM IHEFVG

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.