Factsheet for Solyc11g069890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
nucleus 4
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc04g077210.2.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27990.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G27990.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G27990.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G27990.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G27990.1	Solyc04g077210.2.1	AT4G08150.1	15781858
AT2G27990.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT2G27990.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT2G27990.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT2G27990.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020825	Potato	nucleus	86.38	72.4
GSMUA_Achr11P...	Banana	plastid	23.79	52.47
Solyc10g086640.1.1	Tomato	nucleus	19.31	43.41
KRH30618	Soybean	nucleus	43.28	32.68
KRH25064	Soybean	nucleus	42.76	32.63
KRH26495	Soybean	nucleus	42.93	31.36
KRH22860	Soybean	nucleus	42.24	31.17
VIT_06s0004g02580.t01	Wine grape	nucleus	40.17	31.07
Solyc09g011380.2.1	Tomato	nucleus	25.69	29.56
AT2G27990.1	Thale cress	nucleus	28.45	28.25
GSMUA_Achr10P...	Banana	nucleus	35.86	27.59
Solyc04g080780.2.1	Tomato	nucleus	17.41	25.25
Solyc02g065490.2.1	Tomato	nucleus	25.34	23.56
Solyc08g081400.2.1	Tomato	nucleus	25.69	23.14
Solyc06g074120.2.1	Tomato	nucleus	27.41	22.75
Solyc04g080790.2.1	Tomato	nucleus	25.52	22.39
Solyc11g068950.1.1	Tomato	nucleus	25.0	21.94
Solyc02g089940.2.1	Tomato	nucleus	27.41	21.9
Solyc01g109980.2.1	Tomato	nucleus	24.31	21.86
Solyc01g007070.2.1	Tomato	nucleus	26.38	21.86
Solyc04g079830.2.1	Tomato	nucleus	24.31	20.38
Solyc08g065420.2.1	Tomato	nucleus	15.86	16.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4DAE5	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF125	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc11g069890.1	EnsemblPlants:Solyc11g069890.1.1	TMHMM:TMhelix	UniParc:UPI00027693E4
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:54501584..54506346

Molecular Weight (calculated)

64439.2 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.424

Length

580 amino acids

Sequence
(BLAST)

001: MKFIYILYIH IYIFAGKLIG IFTGLEMSDQ VSEFHVAQHS RRERLRITSS EELDIIHQYG NISYDPSVVL SSSEMINFAT TTTGTTDVAQ NCSNWRSLQH
101: SSCGWNNVTN FNSSGSVIET NNYLSPMFVG GERGVLSGSL NLNSSSIDEK PNFYGGFNEL SKFLRPAQQL LDELCDLAAG SSNVIKCSNF SKKVRDGFRV
201: SCDVNAAAES SSGGGGGGVG DSSGLNESNV CPEYLQKKAK LIFMQEEICK RYKQYHQQMQ MVVSSFETVA GLSAATPYIS LALKTVVQHF KSLRNAITDH
301: LKNIRQALGE DLPSPASGMS NKGDGNSSRL KFVDQTSLHK QKSGSTAGVA FLESQQHVWR PQRGLPERAV AILRAWLFDH FLHPYPTDSD KHMLASQTGL
401: TRNQVSNWFI NARVRVWKPM VEEIHMLETK GGDPTRKSDV NKLVTERTNH VNCGQHLSYV LLNMSGVVMP EKQEICHGGI GPSERLDESS SDHHMWRNQE
501: KRSRIECHNI SDGSSMDGSL MGFVPHQRNG VEIGGNIGAV SLTLGLRQNA EAAQQQQQLQ LHEHRLRQQF GGHIIHDFVD

Best Arabidopsis Sequence Match ( AT2G27990.1 )
(BLAST)

001: MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY
101: DQAGIRPNNV ADLLSDHFSS RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS GSYRGEFSFL PSLENQSVAH
201: NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD
301: DDDDNLSGFS SSSEPLEPKN RLKKAKLLFL QEEVCKWYKL YNHQLQTVMS SFNTVAGLNT ATPYISLALK RTSRSFKALR TAIAEHVKQI SSHSSNGNNN
401: NRFQKRQRSL IGNNVGFESQ QQHIWRPQRG LPERAVAVLR AWLFDHFLHP YPTDSDKQML ATQTGLSRNQ VSNWFINARV RLWKPMVEEI HTLETKAIKN
501: ADTSHNIEPS NRPNTVSSPS HEQTLTGLSG TKRSRLEYMD MVGFNRGNVS LTLELRRGVD NVIQTQTQDH QFGTGSQMFH DFVG

Arabidopsis Description

BLH8BEL1-like homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.