Factsheet for Solyc08g081400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g072030.1.1
Solyc02g081120.2.1
Solyc04g077210.2.1
Solyc08g041820.2.1
Solyc08g080120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	Solyc02g081120.2.1	AT1G62360.1	11701881
AT5G41410.1	Solyc02g081120.2.1	AT1G62360.1	15781858
AT5G41410.1	Solyc02g081120.2.1	AT1G62360.1	17873098
AT5G41410.1	Solyc08g080120.2.1	AT1G62990.1	11701881
AT5G41410.1	Solyc04g077210.2.1	AT4G08150.1	11701881
AT5G41410.1	Solyc04g077210.2.1	AT4G08150.1	15781858
AT5G41410.1	Solyc04g077210.2.1	AT4G08150.1	17873098
AT5G41410.1	Solyc02g072030.1.1	AT4G18830.1	15781858
AT5G41410.1	Solyc08g041820.2.1	AT5G11060.1	11701881
AT5G41410.1	Solyc08g041820.2.1	AT5G25220.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032122	Potato	nucleus	91.3	92.89
VIT_02s0025g00200.t01	Wine grape	nucleus	59.47	59.29
KRH27902	Soybean	nucleus	55.75	55.92
CDY45383	Canola	nucleus	22.83	55.89
KRH77572	Soybean	nucleus	55.9	55.73
GSMUA_Achr1P03680_001	Banana	nucleus	25.0	54.39
KRH59951	Soybean	nucleus	53.57	54.33
KRH41225	Soybean	nucleus	53.57	53.41
GSMUA_Achr2P04310_001	Banana	nucleus	42.39	48.92
GSMUA_Achr1P06400_001	Banana	nucleus	39.13	48.84
GSMUA_Achr4P04480_001	Banana	nucleus	31.21	47.74
CDY44476	Canola	nucleus	40.37	45.77
Bra025497.1-P	Field mustard	nucleus	41.3	44.86
AT5G41410.1	Thale cress	nucleus	42.55	44.84
GSMUA_Achr9P18740_001	Banana	nucleus	39.6	44.27
Solyc10g086640.1.1	Tomato	nucleus	17.55	43.8
Zm00001d035907_P001	Maize	nucleus	31.99	41.37
GSMUA_Achr4P12180_001	Banana	nucleus	33.39	41.11
EER89055	Sorghum	nucleus	33.23	40.84
Os06t0108900-02	Rice	nucleus	33.54	40.75
TraesCS7D01G019800.1	Wheat	nucleus	30.12	40.17
TraesCS7A01G022600.1	Wheat	nucleus	30.12	40.17
TraesCS4A01G469900.1	Wheat	nucleus	30.43	39.52
TraesCS1D01G193800.1	Wheat	nucleus	35.87	39.22
TraesCS1A01G183400.1	Wheat	nucleus	35.56	39.08
TraesCS1B01G191800.1	Wheat	nucleus	35.4	38.97
Os10t0534900-01	Rice	nucleus	34.63	38.05
HORVU1Hr1G049760.1	Barley	nucleus	34.94	37.75
KXG40303	Sorghum	nucleus	36.65	37.7
Os03t0124000-01	Rice	nucleus	34.47	37.56
TraesCS4D01G340700.1	Wheat	nucleus	35.56	37.36
TraesCS4B01G345600.1	Wheat	nucleus	35.4	37.32
TraesCS5A01G514700.1	Wheat	nucleus	34.78	37.02
Zm00001d027435_P001	Maize	nucleus	35.4	36.77
HORVU4Hr1G084590.2	Barley	nucleus	34.47	35.69
EER92018	Sorghum	nucleus	31.83	32.33
Solyc02g065490.2.1	Tomato	nucleus	30.28	31.25
Zm00001d029736_P001	Maize	nucleus, plastid	32.45	30.38
Solyc04g080780.2.1	Tomato	nucleus	18.79	30.25
Solyc09g011380.2.1	Tomato	nucleus	23.6	30.16
Solyc01g109980.2.1	Tomato	nucleus	28.73	28.68
Solyc02g089940.2.1	Tomato	nucleus	31.37	27.82
Solyc04g079830.2.1	Tomato	nucleus	29.66	27.6
Solyc06g074120.2.1	Tomato	nucleus	28.42	26.18
Solyc11g069890.1.1	Tomato	golgi	23.14	25.69
Solyc04g080790.2.1	Tomato	nucleus	26.24	25.57
Solyc01g007070.2.1	Tomato	nucleus	27.64	25.43
Solyc11g068950.1.1	Tomato	nucleus	25.31	24.66
Solyc08g065420.2.1	Tomato	nucleus	17.39	20.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4CPD7	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF66	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g081400.2	EnsemblPlants:Solyc08g081400.2.1
UniParc:UPI000276C0CD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:64468552..64472185

Molecular Weight (calculated)

72654.7 Da

IEP (calculated)

6.711

GRAVY (calculated)

-0.760

Length

644 amino acids

Sequence
(BLAST)

001: MASHHQESII REEIKPRSSS MVTSTGYWFS SDTNNQNPTP HNNIVNHQLQ NFETNPDLYN LSSSTTSSMD QMMIGFPPNN NNPHHVLWKG NFPNKINGVV
101: VDDDDDDHGP SSSKNISEQF YQHETMLATT TTSHQDSWHH DNNRTLLVDD PSMRCVFPCE GNERPSQGLS LSLCSSNPSS IGLQSFELRH QDLQQGLIHD
201: GFLGKSTSIQ QGYFHHYHQV RDSKYLGPAQ ELLSEFCSLG IKKNNDHSSS KLLLKQHDTT ATTSKKQLLQ SLDLLELQKR KTKLLQMLEE VDRRYKHYCD
301: QMKGVVSSFE AVAGNGAATV YSALASRAMS RHFRCLRDGI VAQIKATKMA MGEKDSTTTL IPGSTRGETP RLRLLDQTLR QQKAFQQMNM METHPWRPQR
401: GLPERSVSVL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMVEE MYLEETKEEE EENVGSQDGS KALIDEMTIN NHQSSHIDQK
501: PNLVRIESEC ISSIINHHPH DKNDQNYGVI RGGDQSFGAI ELDFSTNIAY ATNGSDHHHH HHGGGGGSGG VSLTLGLQQH GGSSMGLTTF SSQPSHHNHN
601: HQSSLFYPRD DHDQVQYSSL LDSENQNLPY RNLMGAQLLH DLAG

Best Arabidopsis Sequence Match ( AT5G41410.1 )
(BLAST)

001: MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN
101: VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL
201: SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV
301: AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE
401: RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT
501: SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN
601: LMGAQLLHDI V

Arabidopsis Description

BEL1Homeobox protein BEL1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q38897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.