Factsheet for GSMUA_Achr4P12180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr1P09570_001
GSMUA_Achr1P19120_001
GSMUA_Achr2P09660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P09850_001
GSMUA_Achr3P12130_001
GSMUA_Achr3P13490_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P31770_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr9P05640_001
GSMUA_Achr9P09770_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	GSMUA_Achr3P09850_001	AT1G06920.1	15781858
AT5G41410.1	GSMUA_Achr1P09570_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P19120_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr2P09660_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P12130_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P13490_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr9P09770_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P03660_001	AT1G62990.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P31770_001	AT4G18830.1	15781858
AT5G41410.1	GSMUA_Achr9P05640_001	AT4G18830.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03140_001	Banana	nucleus	8.22	55.84
GSMUA_Achr4P04480_001	Banana	nucleus	37.28	46.32
CDY45383	Canola	nucleus	23.14	46.01
GSMUA_Achr1P03680_001	Banana	nucleus	24.47	43.24
GSMUA_Achr4P14670_001	Banana	nucleus	22.94	40.4
GSMUA_Achr1P06400_001	Banana	nucleus	38.81	39.34
GSMUA_Achr5P08840_001	Banana	nucleus	23.71	39.12
GSMUA_Achr4P07450_001	Banana	nucleus	22.37	38.61
GSMUA_Achr10P...	Banana	nucleus	7.46	38.24
GSMUA_Achr2P04310_001	Banana	nucleus	40.73	38.17
GSMUA_Achr2P06410_001	Banana	nucleus	10.52	37.93
GSMUA_Achr11P...	Banana	plastid	18.93	37.64
GSMUA_Achr1P26900_001	Banana	nucleus	28.49	37.44
GSMUA_Achr1P23300_001	Banana	extracellular	30.59	37.04
GSMUA_Achr10P...	Banana	nucleus	28.87	36.12
VIT_02s0025g00200.t01	Wine grape	nucleus	42.64	34.52
PGSC0003DMT400032122	Potato	nucleus	41.11	33.97
KRH27902	Soybean	nucleus	41.49	33.8
KRH77572	Soybean	nucleus	41.68	33.75
Solyc08g081400.2.1	Tomato	nucleus	41.11	33.39
GSMUA_Achr6P07130_001	Banana	nucleus	31.17	33.2
GSMUA_Achr9P18740_001	Banana	nucleus	36.52	33.16
KRH59951	Soybean	nucleus	39.58	32.6
CDY44476	Canola	nucleus	35.37	32.57
Bra025497.1-P	Field mustard	nucleus	36.52	32.21
KRH41225	Soybean	nucleus	39.2	31.73
AT5G41410.1	Thale cress	nucleus	36.71	31.42
GSMUA_Achr3P29230_001	Banana	nucleus	26.2	30.31
GSMUA_Achr9P21580_001	Banana	nucleus	30.98	29.67
GSMUA_Achr6P18180_001	Banana	nucleus	34.61	28.55
GSMUA_Achr4P13590_001	Banana	nucleus	30.78	28.3
GSMUA_Achr5P03130_001	Banana	cytosol	17.97	28.14
GSMUA_Achr7P14960_001	Banana	nucleus	23.52	27.95
GSMUA_Achr10P...	Banana	plastid	5.16	27.84
GSMUA_Achr7P27440_001	Banana	nucleus	34.42	26.32
GSMUA_Achr4P06630_001	Banana	nucleus	27.72	25.62
GSMUA_Achr5P07020_001	Banana	nucleus	24.67	24.57
GSMUA_Achr2P06420_001	Banana	nucleus	14.72	20.87
GSMUA_Achr10P...	Banana	nucleus	26.39	18.3
GSMUA_Achr2P19430_001	Banana	nucleus	18.55	17.93
GSMUA_AchrUn_...	Banana	nucleus	19.5	17.2
GSMUA_Achr4P02680_001	Banana	nucleus	18.74	16.93
GSMUA_Achr11P...	Banana	plastid	10.52	13.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G12180_001
EnsemblPlants:GSMUA_Achr4P12180_001	EnsemblPlants:GSMUA_Achr4T12180_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M0SN83	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF66	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002948457	SEG:seg

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G12180_001]

Coordinates

chr4:-:8996506..8999629

Molecular Weight (calculated)

58489.2 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.595

Length

523 amino acids

Sequence
(BLAST)

001: MAHESQYSQF LLGINPLTQS LEHNHDLLGM LEISSRQQTS HFTGDFVHRD LPEPSSRRFL VPAAEMATAA SAWPVADGKL CLPLFNVKPS DAFGVLESLQ
101: HSVSGDSLQL RAAEQQQLMQ EREGLAAPPP PPFYSHNSKY VKPAQELLGE LCSLGGEWNS QERSEKASHK KKREPSSSSS SSSWQQSLCA MNHLELHNLK
201: IKLLSMLEEV GRRYRKYGEQ MEGVVSSFES IAGEGSATVY LTLASTAMSK HFKRLKDGIA GQINAVRRAM GEKDPSAPAM TRGETPRLKL LDQCMRQQKA
301: LQQGMAQQLP WRPQRGLPEH SVSILRAWLF EHFLHPYPSD VDKIILARQT GLTRSQVSNW FINARVRIWK PMVEDMYAEE TMELDGHSNS PTTGHQHSNN
401: QNPKPNSTLE RKPLPTLLRQ SQQQHQHHQQ ITGAENFSVV DFDFSSGSYA SDNLRSSVSL TLGLQQQSKG GMSSTFSAAS QQPLLFARQH AGHGQYVGFS
501: MVDGEEDQPL PYRNLMGIQM LHD

Best Arabidopsis Sequence Match ( AT5G41410.1 )
(BLAST)

001: MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN
101: VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL
201: SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV
301: AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE
401: RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT
501: SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN
601: LMGAQLLHDI V

Arabidopsis Description

BEL1Homeobox protein BEL1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q38897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.