Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P09170_001 | Banana | nucleus | 19.24 | 50.41 |
| GSMUA_Achr6P16480_001 | Banana | nucleus | 21.45 | 41.46 |
| GSMUA_Achr10P... | Banana | nucleus | 21.45 | 36.96 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 21.45 | 36.96 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 25.55 | 35.84 |
| GSMUA_Achr6P36210_001 | Banana | nucleus | 29.34 | 33.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.92 | 32.64 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 25.87 | 31.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.08 | 31.45 |
| GSMUA_Achr10P... | Banana | nucleus | 27.13 | 31.05 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 29.97 | 30.06 |
| GSMUA_Achr9P01040_001 | Banana | nucleus | 24.92 | 28.01 |
| GSMUA_Achr8P24490_001 | Banana | nucleus | 35.02 | 26.81 |
| GSMUA_Achr9P28060_001 | Banana | nucleus | 25.55 | 26.47 |
| GSMUA_Achr9P18510_001 | Banana | nucleus | 25.87 | 26.28 |
| GSMUA_Achr3P12130_001 | Banana | nucleus | 31.23 | 25.98 |
| GSMUA_Achr9P07330_001 | Banana | nucleus | 29.34 | 25.69 |
| GSMUA_Achr10P... | Banana | nucleus | 31.86 | 25.12 |
| GSMUA_Achr1P09570_001 | Banana | nucleus | 27.13 | 24.78 |
| GSMUA_Achr3P13490_001 | Banana | nucleus | 34.07 | 24.77 |
| GSMUA_Achr9P09770_001 | Banana | nucleus | 24.61 | 24.45 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 28.08 | 24.38 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 28.08 | 24.32 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 22.08 | 24.14 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 25.24 | 23.81 |
| GSMUA_Achr3P02490_001 | Banana | nucleus | 31.55 | 23.7 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 28.71 | 23.51 |
| AT1G26260.1 | Thale cress | nucleus | 28.71 | 23.33 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 26.81 | 23.16 |
| GSMUA_Achr2P21460_001 | Banana | nucleus | 28.08 | 23.0 |
| GSMUA_Achr1P19120_001 | Banana | nucleus | 30.6 | 22.61 |
| GSMUA_Achr10P... | Banana | nucleus | 28.08 | 21.04 |
| GSMUA_Achr6P27780_001 | Banana | nucleus | 33.12 | 20.11 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 28.71 | 19.91 |
| GSMUA_Achr2P06090_001 | Banana | nucleus | 29.97 | 19.87 |
| GSMUA_Achr2P21280_001 | Banana | nucleus | 30.91 | 19.48 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 27.13 | 19.46 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 29.65 | 19.26 |
| GSMUA_Achr3P10600_001 | Banana | nucleus | 27.76 | 19.09 |
| GSMUA_Achr3P17290_001 | Banana | plastid | 29.34 | 16.32 |
| GSMUA_Achr10P... | Banana | mitochondrion | 31.55 | 15.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P09660_001 | EnsemblPlants:GSMUA_Achr2T09660_001 | EnsemblPlantsGene:GSMUA_Achr2G09660_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000295C28E | UniProt:M0S6K7 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
Basic helix-loop-helix (BHLH) family protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G09660_001]
Coordinates
chr2:+:13111091..13113111
Molecular Weight (calculated)
34411.3 Da
IEP (calculated)
7.816
GRAVY (calculated)
-0.603
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MQCPTAPPSS NKLSAGLQHQ QQQQPPPSAH DFTKTIVLAS TPFGMVPDGW TGVADGAQIQ YPVFGAANVG QENASANSFE NSTEKRKAPK SKQESRSSGA
101: EEEGTARGGA TSKNKKKASG SDATKETDYI HVRARRGQAT DSHSLAERVR RERISERMKY LQELVPGCSK IMGKASTLDE IINYVQSLQR QVEFLSMKLA
201: AAEPRMHLSS SNFFDREELN APCNSSSVPV MGVSSDQLKH SGLQLASLQQ DALASCLDVH GCSTWDAGLH GFHDGEIHRG SHLCPGNQCK LDLMVSDVGG
301: TNCRGESKSR IYHFLFF
101: EEEGTARGGA TSKNKKKASG SDATKETDYI HVRARRGQAT DSHSLAERVR RERISERMKY LQELVPGCSK IMGKASTLDE IINYVQSLQR QVEFLSMKLA
201: AAEPRMHLSS SNFFDREELN APCNSSSVPV MGVSSDQLKH SGLQLASLQQ DALASCLDVH GCSTWDAGLH GFHDGEIHRG SHLCPGNQCK LDLMVSDVGG
301: TNCRGESKSR IYHFLFF
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.