Factsheet for Bra016128.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra017638.1-P
Bra020600.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G71692.1	Bra000393.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra004928.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra039324.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra011509.1-P	AT3G57230.1	15805477
AT1G71692.1	Bra017638.1-P	AT3G57230.1	15805477
AT1G71692.1	Bra010623.1-P	AT4G37940.1	15805477
AT1G71692.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048352	Potato	nucleus	83.87	44.83
CDX96334	Canola	nucleus	98.39	28.64
Bra007972.1-P	Field mustard	nucleus	96.77	28.44
AT1G71692.1	Thale cress	nucleus	96.77	28.44
Bra003919.1-P	Field mustard	nucleus	93.55	27.36
VIT_18s0041g02140.t01	Wine grape	nucleus	85.48	26.77
KRH39983	Soybean	nucleus	85.48	26.11
KRH23802	Soybean	nucleus	85.48	25.98
Solyc11g032100.1.1	Tomato	nucleus	83.87	25.87
Os12t0206800-00	Rice	nucleus	80.65	24.75
TraesCS2A01G311100.1	Wheat	nucleus	79.03	24.26
TraesCS2D01G309300.1	Wheat	nucleus	79.03	24.26
Zm00001d035053_P002	Maize	nucleus	74.19	23.47
Zm00001d025479_P001	Maize	nucleus	74.19	23.12
GSMUA_Achr11P...	Banana	nucleus	82.26	22.77
KXG26379	Sorghum	nucleus	74.19	22.44
EES13239	Sorghum	mitochondrion, nucleus	77.42	21.62
GSMUA_Achr7P02960_001	Banana	nucleus	82.26	21.52
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	77.42	20.96
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	77.42	20.87
Os08t0112700-01	Rice	nucleus	74.19	20.72
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	77.42	20.69
OQU78925	Sorghum	nucleus	70.97	20.37
Zm00001d049692_P001	Maize	nucleus	72.58	17.11
TraesCS1B01G467500.1	Wheat	nucleus	0.0	0.0
PGSC0003DMT400048353	Potato	nucleus	0.0	0.0
Bra016129.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra016128	EnsemblPlants:Bra016128.1	EnsemblPlants:Bra016128.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DI01	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541AEC	:	:	:

Description

AT1G71692 (E=7e-029) AGL12, XAL1 | AGL12 (AGAMOUS-LIKE 12); transcription factor

Coordinates

chrA07:-:19278335..19278523

Molecular Weight (calculated)

7043.9 Da

IEP (calculated)

10.816

GRAVY (calculated)

-0.131

Length

62 amino acids

Sequence
(BLAST)

1: MVRGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GY

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.