Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028019.1-P | Field mustard | nucleus | 97.89 | 97.89 |
| CDX73406 | Canola | plastid | 92.98 | 93.97 |
| CDX73409 | Canola | nucleus | 44.91 | 55.65 |
| CDY40199 | Canola | nucleus | 45.61 | 49.81 |
| CDX93743 | Canola | nucleus | 42.46 | 46.01 |
| AT5G26865.1 | Thale cress | nucleus | 19.3 | 43.65 |
| AT5G27050.1 | Thale cress | nucleus | 17.54 | 41.67 |
| AT5G27944.1 | Thale cress | nucleus | 28.42 | 36.16 |
| CDX93708 | Canola | nucleus | 32.98 | 34.06 |
| AT5G27580.1 | Thale cress | nucleus | 25.96 | 33.18 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 21.75 | 33.16 |
| CDY63012 | Canola | cytosol | 22.81 | 32.5 |
| CDY27890 | Canola | nucleus | 34.39 | 30.72 |
| CDX93682 | Canola | nucleus | 25.96 | 30.58 |
| AT5G27070.1 | Thale cress | nucleus | 29.82 | 29.62 |
| CDY63010 | Canola | plastid | 6.32 | 29.03 |
| AT5G26950.1 | Thale cress | nucleus | 28.42 | 28.03 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 31.93 | 26.76 |
| CDY56522 | Canola | nucleus | 18.95 | 23.18 |
| CDY28851 | Canola | nucleus | 22.81 | 22.89 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 18.95 | 21.95 |
| CDX95509 | Canola | plastid | 20.0 | 19.72 |
| CDY65583 | Canola | plastid | 18.95 | 18.82 |
| CDY44595 | Canola | nucleus | 21.05 | 18.81 |
| CDX99332 | Canola | plastid | 23.16 | 18.54 |
| CDY68883 | Canola | nucleus | 19.3 | 18.52 |
| CDX92256 | Canola | plastid | 23.86 | 18.38 |
| CDY36817 | Canola | plastid | 18.25 | 17.81 |
| CDY44599 | Canola | nucleus | 20.7 | 17.56 |
| CDY36823 | Canola | nucleus | 18.25 | 17.05 |
| CDY30838 | Canola | nucleus | 21.05 | 16.76 |
| CDY37821 | Canola | nucleus | 16.14 | 16.67 |
| CDY67867 | Canola | mitochondrion | 24.56 | 16.59 |
| CDY18533 | Canola | nucleus | 4.21 | 16.44 |
| CDY33964 | Canola | nucleus | 15.79 | 15.57 |
| CDX75976 | Canola | mitochondrion, nucleus | 8.42 | 11.82 |
| CDY44597 | Canola | nucleus | 7.72 | 9.28 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DZ80 | EnsemblPlants:CDX93744 | ProteinID:CDX93744 | ProteinID:CDX93744.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00156465001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEB4BD | SEG:seg |
Description
BnaA09g23440D
Coordinates
chrLK031877:+:334859..335716
Molecular Weight (calculated)
32594.9 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.767
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSSRNN KKVNKFSVRK PTLFKKPFTS LFERQETILR KAGELSTLCD SLICVIHYDR LGNLVKTWPE DESQVQGVAE RYSKLTHEEK QKKSTNLSKF
101: CNKKMHDEKK RFSIKFSQKV QELEGSLVDK LQLLQDILLR EDQSIMSEQN HNFPNYSSVP DHQQQSVSAT STEQDMSRGD VYNSAAATDQ LLNHQSKYSI
201: FLFNHENASF TQLPHSVSSS LQQTYYNNLS DNRALLGGQG FNFGFGNNNV TTALPEEQVN FGYYNNSLNN TQGFNFGYDF NNLCI
101: CNKKMHDEKK RFSIKFSQKV QELEGSLVDK LQLLQDILLR EDQSIMSEQN HNFPNYSSVP DHQQQSVSAT STEQDMSRGD VYNSAAATDQ LLNHQSKYSI
201: FLFNHENASF TQLPHSVSSS LQQTYYNNLS DNRALLGGQG FNFGFGNNNV TTALPEEQVN FGYYNNSLNN TQGFNFGYDF NNLCI
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
Arabidopsis Description
AGL89AGAMOUS-like 89 [Source:UniProtKB/TrEMBL;Acc:Q7XJL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.