Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G26865.1 | Thale cress | nucleus | 45.98 | 81.75 |
| AT5G27580.1 | Thale cress | nucleus | 79.02 | 79.37 |
| AT5G27050.1 | Thale cress | nucleus | 41.52 | 77.5 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 60.71 | 72.73 |
| AT5G27070.1 | Thale cress | nucleus | 82.14 | 64.11 |
| AT5G26950.1 | Thale cress | nucleus | 73.66 | 57.09 |
| CDY63010 | Canola | plastid | 9.82 | 35.48 |
| Bra020923.1-P | Field mustard | nucleus | 28.12 | 30.14 |
| CDX73406 | Canola | plastid | 36.16 | 28.72 |
| CDX93744 | Canola | nucleus | 36.16 | 28.42 |
| Bra028019.1-P | Field mustard | nucleus | 35.71 | 28.07 |
| Bra007138.1-P | Field mustard | nucleus | 34.38 | 27.4 |
| CDY63012 | Canola | cytosol | 23.66 | 26.5 |
| Bra018741.1-P | Field mustard | nucleus | 30.8 | 26.14 |
| CDX93708 | Canola | nucleus | 31.7 | 25.72 |
| Bra004071.1-P | Field mustard | nucleus | 32.59 | 25.7 |
| CDX73409 | Canola | nucleus | 26.34 | 25.65 |
| CDX93682 | Canola | nucleus | 27.68 | 25.62 |
| AT4G02235.1 | Thale cress | nucleus | 21.88 | 25.0 |
| CDY40199 | Canola | nucleus | 28.57 | 24.52 |
| Bra018767.1-P | Field mustard | nucleus | 32.59 | 23.86 |
| CDY27890 | Canola | nucleus | 33.93 | 23.82 |
| CDX93743 | Canola | nucleus | 27.68 | 23.57 |
| Bra028020.1-P | Field mustard | nucleus | 27.68 | 23.57 |
| Bra015129.1-P | Field mustard | nucleus | 33.04 | 23.2 |
| CDY56522 | Canola | nucleus | 21.43 | 20.6 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 29.91 | 20.3 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 30.8 | 20.29 |
| AT5G40220.1 | Thale cress | nucleus | 28.12 | 19.44 |
| CDY28851 | Canola | nucleus | 24.11 | 19.01 |
| AT5G39810.1 | Thale cress | plastid | 27.23 | 18.54 |
| AT5G39750.1 | Thale cress | nucleus | 28.57 | 18.03 |
| Bra007139.1-P | Field mustard | nucleus | 13.39 | 17.65 |
| AT5G65330.1 | Thale cress | nucleus | 26.79 | 17.6 |
| AT5G40120.1 | Thale cress | nucleus | 29.91 | 17.4 |
| AT4G11250.1 | Thale cress | nucleus | 24.55 | 16.72 |
| AT5G38740.1 | Thale cress | nucleus | 31.7 | 16.67 |
| AT3G18650.1 | Thale cress | plastid | 28.57 | 16.58 |
| CDY67867 | Canola | mitochondrion | 29.46 | 15.64 |
| AT5G37415.1 | Thale cress | nucleus | 21.88 | 15.51 |
| CDY18533 | Canola | nucleus | 4.91 | 15.07 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:6240316 | ProteinID:AED93748.1 | ArrayExpress:AT5G27944 | EnsemblPlantsGene:AT5G27944 |
| RefSeq:AT5G27944 | TAIR:AT5G27944 | RefSeq:AT5G27944-TAIR-G | EnsemblPlants:AT5G27944.1 | TAIR:AT5G27944.1 | Unigene:At.74347 |
| UniProt:B3H5S0 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | RefSeq:NP_001119289.1 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001739502 | SEG:seg |
Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:B3H5S0]
Coordinates
chr5:-:9975918..9976592
Molecular Weight (calculated)
25784.7 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.765
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCDIEV CVILYGRDGE LIKTWPEDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDNKLSE KVLEMEDSLE SGLRVLQNKL LLLQPEKNQT KLGQSRAVSS TTNLLSSPEN HHNQQWTEPL ENGVSNTEQE LSTSSLSQHQ
201: SKYSVFLYNH DNGSFYQVPD SICF
101: RTNLSLFLRK KILDDNKLSE KVLEMEDSLE SGLRVLQNKL LLLQPEKNQT KLGQSRAVSS TTNLLSSPEN HHNQQWTEPL ENGVSNTEQE LSTSSLSQHQ
201: SKYSVFLYNH DNGSFYQVPD SICF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.