Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93682 | Canola | nucleus | 95.16 | 24.38 |
| CDX93708 | Canola | nucleus | 83.87 | 18.84 |
| CDY27890 | Canola | nucleus | 79.03 | 15.36 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 83.87 | 15.29 |
| CDY63012 | Canola | cytosol | 45.16 | 14.0 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 37.1 | 12.3 |
| CDX93743 | Canola | nucleus | 51.61 | 12.17 |
| AT5G26865.1 | Thale cress | nucleus | 24.19 | 11.9 |
| AT5G27944.1 | Thale cress | nucleus | 35.48 | 9.82 |
| AT5G27580.1 | Thale cress | nucleus | 33.87 | 9.42 |
| AT5G27050.1 | Thale cress | nucleus | 17.74 | 9.17 |
| CDY40199 | Canola | nucleus | 35.48 | 8.43 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 30.65 | 7.72 |
| AT5G27070.1 | Thale cress | nucleus | 35.48 | 7.67 |
| CDX73406 | Canola | plastid | 33.87 | 7.45 |
| AT5G26950.1 | Thale cress | nucleus | 33.87 | 7.27 |
| CDX95509 | Canola | plastid | 32.26 | 6.92 |
| CDY56522 | Canola | nucleus | 25.81 | 6.87 |
| CDX73409 | Canola | nucleus | 24.19 | 6.52 |
| CDX93744 | Canola | nucleus | 29.03 | 6.32 |
| CDY65583 | Canola | plastid | 27.42 | 5.92 |
| CDY33964 | Canola | nucleus | 27.42 | 5.88 |
| CDY36817 | Canola | plastid | 27.42 | 5.82 |
| CDY37821 | Canola | nucleus | 25.81 | 5.8 |
| CDX99332 | Canola | plastid | 32.26 | 5.62 |
| CDY30838 | Canola | nucleus | 32.26 | 5.59 |
| CDY68883 | Canola | nucleus | 25.81 | 5.39 |
| CDY28851 | Canola | nucleus | 24.19 | 5.28 |
| CDY36823 | Canola | nucleus | 25.81 | 5.25 |
| CDX92256 | Canola | plastid | 30.65 | 5.14 |
| CDY44595 | Canola | nucleus | 25.81 | 5.02 |
| CDY67867 | Canola | mitochondrion | 33.87 | 4.98 |
| CDY44599 | Canola | nucleus | 24.19 | 4.46 |
| CDY18533 | Canola | nucleus | 3.23 | 2.74 |
| CDX75976 | Canola | mitochondrion, nucleus | 3.23 | 0.99 |
| CDY44597 | Canola | nucleus | 3.23 | 0.84 |
Protein Annotations
| EnsemblPlants:CDY63010 | EnsemblPlantsGene:GSBRNA2T00037849001 | GO:A0A078JE98 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | PFAM:PF00319 | ProteinID:CDY63010 | ProteinID:CDY63010.1 | SEG:seg | SUPFAM:SSF55455 |
| UniParc:UPI0004EF08ED | UniProt:A0A078JE98 | MapMan:15.5.14 | : | : | : |
Description
BnaC06g40920DBnaC06g40920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE98]
Coordinates
chrLK034233:-:3514..3922
Molecular Weight (calculated)
7076.7 Da
IEP (calculated)
11.391
GRAVY (calculated)
-0.429
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MNSLSSSASS STRMKNNNKL SVRNQTRFKK SFLLLREKTI LKKALELSIL CDNDICSSRV RL
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Arabidopsis Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.