Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77232 | Canola | nucleus | 100.0 | 100.0 |
| CDY67845 | Canola | nucleus | 94.74 | 94.74 |
| CDY16529 | Canola | nucleus | 93.61 | 90.22 |
| CDY16511 | Canola | nucleus | 87.59 | 86.62 |
| CDY12757 | Canola | nucleus | 29.7 | 49.38 |
| CDY28103 | Canola | plastid | 43.98 | 47.37 |
| CDY49671 | Canola | mitochondrion, nucleus | 41.35 | 46.41 |
| CDY50510 | Canola | nucleus | 39.85 | 46.29 |
| CDX93668 | Canola | nucleus | 39.85 | 43.98 |
| CDY54756 | Canola | nucleus | 28.57 | 38.38 |
| CDX85396 | Canola | nucleus | 38.72 | 36.14 |
| CDX70208 | Canola | nucleus | 27.07 | 35.82 |
| CDY44873 | Canola | nucleus | 26.69 | 35.32 |
| AT5G49490.1 | Thale cress | nucleus | 37.59 | 35.09 |
| CDX85418 | Canola | nucleus | 32.33 | 32.82 |
| CDY12741 | Canola | nucleus | 33.46 | 32.36 |
| CDY40477 | Canola | nucleus | 28.95 | 31.17 |
| AT5G38620.1 | Thale cress | nucleus | 40.23 | 30.66 |
| CDY46277 | Canola | nucleus | 25.56 | 30.63 |
| AT5G49420.1 | Thale cress | nucleus | 38.35 | 30.54 |
| CDX86226 | Canola | nucleus | 33.08 | 29.73 |
| CDY12872 | Canola | nucleus | 28.57 | 29.46 |
| CDY01199 | Canola | nucleus | 32.33 | 29.25 |
| CDX86252 | Canola | nucleus | 33.08 | 28.95 |
| CDY25046 | Canola | nucleus | 16.92 | 17.11 |
| CDY50584 | Canola | nucleus | 16.54 | 16.73 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 2.26 | 11.11 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CKG7 | UniProt:A0A078CKG7 | EnsemblPlants:CDY32839 | ProteinID:CDY32839 |
| ProteinID:CDY32839.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00052939001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEE60C |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g02610DBnaC08g02610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CKG7]
Coordinates
chrLK032300:-:333370..334170
Molecular Weight (calculated)
29323.3 Da
IEP (calculated)
4.414
GRAVY (calculated)
-0.422
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN VPFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSKEMREDI
101: AVCMARKELG LGYWWEDEKL LASKSRDEIM EAMESMHILW KAAERLREDE AIDFDQREGS LEKMEDMSND QTTLISTEDD QIIAVCDSFF NYNNNNAALS
201: TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND LANVDLDTIF EGLADLDAEL VASFLM
101: AVCMARKELG LGYWWEDEKL LASKSRDEIM EAMESMHILW KAAERLREDE AIDFDQREGS LEKMEDMSND QTTLISTEDD QIIAVCDSFF NYNNNNAALS
201: TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND LANVDLDTIF EGLADLDAEL VASFLM
001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.