Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44595 | Canola | nucleus | 83.12 | 61.76 |
| Bra025607.1-P | Field mustard | nucleus | 67.09 | 45.56 |
| CDY30838 | Canola | nucleus | 61.18 | 40.5 |
| CDY68883 | Canola | nucleus | 45.57 | 36.36 |
| CDY36823 | Canola | nucleus | 38.82 | 30.16 |
| CDY44599 | Canola | nucleus | 41.77 | 29.46 |
| CDY36817 | Canola | plastid | 34.6 | 28.08 |
| CDY65583 | Canola | plastid | 32.07 | 26.48 |
| CDY33964 | Canola | nucleus | 20.68 | 16.95 |
| CDY37821 | Canola | nucleus | 18.99 | 16.3 |
| AT5G37415.1 | Thale cress | nucleus | 19.83 | 14.87 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 20.68 | 14.85 |
| AT5G39750.1 | Thale cress | nucleus | 21.52 | 14.37 |
| AT5G40220.1 | Thale cress | nucleus | 19.41 | 14.2 |
| AT5G40120.1 | Thale cress | nucleus | 22.78 | 14.03 |
| AT5G38740.1 | Thale cress | nucleus | 21.52 | 11.97 |
| CDY56522 | Canola | nucleus | 10.55 | 10.73 |
| AT5G39810.1 | Thale cress | plastid | 14.77 | 10.64 |
| CDX73409 | Canola | nucleus | 9.7 | 10.0 |
| CDY18533 | Canola | nucleus | 2.95 | 9.59 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 8.86 | 8.54 |
| CDX92256 | Canola | plastid | 13.08 | 8.38 |
| CDY40199 | Canola | nucleus | 8.86 | 8.05 |
| CDX93743 | Canola | nucleus | 8.86 | 7.98 |
| CDX93744 | Canola | nucleus | 9.28 | 7.72 |
| CDX73406 | Canola | plastid | 8.86 | 7.45 |
| CDX99332 | Canola | plastid | 10.55 | 7.02 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.91 | 6.9 |
| CDY63012 | Canola | cytosol | 5.49 | 6.5 |
| CDX93682 | Canola | nucleus | 6.33 | 6.2 |
| CDY27890 | Canola | nucleus | 8.02 | 5.96 |
| CDY67867 | Canola | mitochondrion | 10.55 | 5.92 |
| CDX93708 | Canola | nucleus | 6.33 | 5.43 |
| CDX95509 | Canola | plastid | 6.33 | 5.19 |
| CDY28851 | Canola | nucleus | 5.49 | 4.58 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 5.49 | 3.82 |
| CDY63010 | Canola | plastid | 0.84 | 3.23 |
Protein Annotations
| EnsemblPlants:CDY44597 | EnsemblPlantsGene:GSBRNA2T00080528001 | GO:A0A078I3I9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ProteinID:CDY44597 | ProteinID:CDY44597.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE5075 | UniProt:A0A078I3I9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA04g09930DBnaA04g09930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3I9]
Coordinates
chrLK032595:+:190621..193266
Molecular Weight (calculated)
27205.3 Da
IEP (calculated)
5.501
GRAVY (calculated)
-0.399
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDKKTMINN FNKKAKRNVE ELKYPISDHY SPHQINQLIQ SLELSYSTLQ ERRRFLAAKA NLEDRQHSFN PSPFTQESVL KNQELCVNDN NNNSFQHLCN
101: MMCMGNINNV QHPWVSNAHP PELQEPNQLM QHELNYGFDQ NMCMSDPTNS FSVVDPCLPN MLPDDFCFDF QDPYGGNVVG NPSFSQDFFP DMSSSYVYGS
201: RLLQDFLFLL SLCLSISILR SLGLLPVLSS VLLHLLS
101: MMCMGNINNV QHPWVSNAHP PELQEPNQLM QHELNYGFDQ NMCMSDPTNS FSVVDPCLPN MLPDDFCFDF QDPYGGNVVG NPSFSQDFFP DMSSSYVYGS
201: RLLQDFLFLL SLCLSISILR SLGLLPVLSS VLLHLLS
001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
Arabidopsis Description
AGL78AGAMOUS-like 78 [Source:UniProtKB/TrEMBL;Acc:Q9FKQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.