CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70208
CDX80577
CDX88231
CDY05333
CDY05514
CDY05515
CDY12872
CDY25046
CDY40477
CDY44873
CDY50584
CDY54756
CDY67043
CDY70782
CDY71564
CDY71896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18650.1	CDX80577	AT1G31640.1	15805477
AT3G18650.1	CDX88231	AT1G31640.1	15805477
AT3G18650.1	CDY05333	AT1G31640.1	15805477
AT3G18650.1	CDY05514	AT1G31640.1	15805477
AT3G18650.1	CDY05515	AT1G31640.1	15805477
AT3G18650.1	CDY67043	AT1G31640.1	15805477
AT3G18650.1	CDY70782	AT1G31640.1	15805477
AT3G18650.1	CDY71564	AT1G31640.1	15805477
AT3G18650.1	CDY71896	AT1G31640.1	15805477
AT3G18650.1	CDX70208	AT1G46408.1	15805477
AT3G18650.1	CDY44873	AT1G46408.1	15805477
AT3G18650.1	CDY25046	AT1G48150.1	15805477
AT3G18650.1	CDY50584	AT1G48150.1	15805477
AT3G18650.1	CDY12872	AT1G60880.1	15805477
AT3G18650.1	CDY40477	AT1G60880.1	15805477
AT3G18650.1	CDY54756	AT1G60880.1	15805477
AT3G18650.1	CDY12872	AT1G60920.1	15805477
AT3G18650.1	CDY40477	AT1G60920.1	15805477
AT3G18650.1	CDY54756	AT1G60920.1	15805477
AT3G18650.1	CDX70208	AT5G04640.1	15805477
AT3G18650.1	CDY44873	AT5G04640.1	15805477
AT3G18650.1	CDY25046	AT5G27130.1	15805477
AT3G18650.1	CDY50584	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	97.56	70.18
CDX95509	Canola	plastid	70.73	60.21
CDX99332	Canola	plastid	64.23	44.38
CDX92256	Canola	plastid	65.85	43.78
AT3G18650.1	Thale cress	plastid	49.19	31.35
CDY63010	Canola	plastid	7.72	30.65
CDX75976	Canola	mitochondrion, nucleus	21.95	26.6
CDY63012	Canola	cytosol	17.89	22.0
CDY65583	Canola	plastid	25.2	21.6
CDY68883	Canola	nucleus	26.02	21.55
CDY36823	Canola	nucleus	26.42	21.31
CDY36817	Canola	plastid	25.2	21.23
CDY44595	Canola	nucleus	26.02	20.06
CDY44599	Canola	nucleus	27.24	19.94
CDX73406	Canola	plastid	22.76	19.86
CDX93744	Canola	nucleus	21.95	18.95
CDX93682	Canola	nucleus	18.29	18.59
CDX93708	Canola	nucleus	20.73	18.48
CDY30838	Canola	nucleus	26.02	17.88
CDY37821	Canola	nucleus	19.51	17.39
CDX73409	Canola	nucleus	15.85	16.96
CDY33964	Canola	nucleus	19.92	16.95
CDX93743	Canola	nucleus	17.48	16.35
CDY28851	Canola	nucleus	18.7	16.2
CDY40199	Canola	nucleus	16.67	15.71
CDY27890	Canola	nucleus	19.92	15.36
CDY40595	Canola	cytosol, golgi, vacuole	20.33	14.71
CDY56522	Canola	nucleus	12.6	13.3
CDY67867	Canola	mitochondrion	21.54	12.56
CDY18533	Canola	nucleus	2.85	9.59
CDY44597	Canola	nucleus	8.54	8.86

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078FZD4	UniProt:A0A078FZD4	EnsemblPlants:CDY18534	ProteinID:CDY18534
ProteinID:CDY18534.1	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00005560001
InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0004EDE3C5	SEG:seg	:	:	:	:

Description

BnaA01g26610DBnaA01g26610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZD4]

Coordinates

chrLK032086:-:339721..340461

Molecular Weight (calculated)

28591.2 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.763

Length

246 amino acids

Sequence
(BLAST)

001: MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVSVICYGSD GALRTWPKDR EKVKDMAVRY SQLSEVKRRI KQWDLNKFLE
101: EVNKDPKKKN KKKKVKLESS YKYPDWDPRF DNCSVEQLTE LIQSLECKQT IMQDRLRAVL ESQRQRNMYY MNMAEPTQMN HLQQQLPNQD QSLAPLPNSL
201: TVYQYPNMDT YSSFLGGQET GRNEFLSTNM IPYNSFNSNC VNMFQN

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.