Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12757 | Canola | nucleus | 44.73 | 76.88 |
| CDY01199 | Canola | nucleus | 56.73 | 53.06 |
| CDY44873 | Canola | nucleus | 27.27 | 37.31 |
| CDY28103 | Canola | plastid | 33.45 | 37.25 |
| CDX85396 | Canola | nucleus | 38.18 | 36.84 |
| CDY50510 | Canola | nucleus | 29.82 | 35.81 |
| CDX93668 | Canola | nucleus | 30.55 | 34.85 |
| CDY49671 | Canola | mitochondrion, nucleus | 29.82 | 34.6 |
| CDY67845 | Canola | nucleus | 33.09 | 34.21 |
| CDY16511 | Canola | nucleus | 33.45 | 34.2 |
| CDX70208 | Canola | nucleus | 24.73 | 33.83 |
| CDX77232 | Canola | nucleus | 32.36 | 33.46 |
| CDY32839 | Canola | nucleus | 32.36 | 33.46 |
| CDY16529 | Canola | nucleus | 33.45 | 33.33 |
| CDY54756 | Canola | nucleus | 23.64 | 32.83 |
| AT5G38620.1 | Thale cress | nucleus | 39.27 | 30.95 |
| CDX85418 | Canola | nucleus | 29.09 | 30.53 |
| CDX86252 | Canola | nucleus | 33.09 | 29.93 |
| CDX86226 | Canola | nucleus | 32.0 | 29.73 |
| AT5G49490.1 | Thale cress | nucleus | 29.82 | 28.77 |
| AT5G49420.1 | Thale cress | nucleus | 34.55 | 28.44 |
| CDY46277 | Canola | nucleus | 21.82 | 27.03 |
| CDY40477 | Canola | nucleus | 22.91 | 25.51 |
| CDY12872 | Canola | nucleus | 22.91 | 24.42 |
| CDY50584 | Canola | nucleus | 14.18 | 14.83 |
| CDY25046 | Canola | nucleus | 13.82 | 14.45 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 2.55 | 12.96 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FHQ4 | UniProt:A0A078FHQ4 | EnsemblPlants:CDY12741 | ProteinID:CDY12741 |
| ProteinID:CDY12741.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00070316001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE6E6A |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g29000DBnaC04g29000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHQ4]
Coordinates
chrLK032026:+:549845..550672
Molecular Weight (calculated)
30843.3 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.624
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGTKRKAT MERITKRESA ATTFTKRSFG LHSKVAQLCL LNGAQIAVLA TPPSANSNVS FFSFGHSSVD SIVTAFLKGE RPAVREEIDD HEEDLGICLA
101: RKELGLPQWW EDDSFLKSKN PQELSHAITS MSRLLSKINE LRAQDAEAEP PLKKQKKKKN EETMKKTEPT VEQTLVLPSG SSDKTLDYNN NNVMRDEELD
201: QIMSTCDSFG LPHNNNNNSL EEIDFDQLID LDLDFDFDSD NNEAMKMTEP LDQPLILPSD ICGAPETTLP IQLER
101: RKELGLPQWW EDDSFLKSKN PQELSHAITS MSRLLSKINE LRAQDAEAEP PLKKQKKKKN EETMKKTEPT VEQTLVLPSG SSDKTLDYNN NNVMRDEELD
201: QIMSTCDSFG LPHNNNNNSL EEIDFDQLID LDLDFDFDSD NNEAMKMTEP LDQPLILPSD ICGAPETTLP IQLER
001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
Arabidopsis Description
MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.