CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12757	Canola	nucleus	12.96	4.38
CDY54756	Canola	nucleus	12.96	3.54
CDX85418	Canola	nucleus	14.81	3.05
CDY46277	Canola	nucleus	11.11	2.7
CDY12741	Canola	nucleus	12.96	2.55
CDY01199	Canola	nucleus	12.96	2.38
CDX77232	Canola	nucleus	11.11	2.26
CDY67845	Canola	nucleus	11.11	2.26
CDY32839	Canola	nucleus	11.11	2.26
CDY16529	Canola	nucleus	11.11	2.17
CDX86226	Canola	nucleus	11.11	2.03
CDX86252	Canola	nucleus	11.11	1.97
CDX85396	Canola	nucleus	9.26	1.75
CDY40477	Canola	nucleus	7.41	1.62
CDY25046	Canola	nucleus	7.41	1.52
CDY50584	Canola	nucleus	7.41	1.52
CDY44873	Canola	nucleus	5.56	1.49
CDX70208	Canola	nucleus	5.56	1.49
CDY16511	Canola	nucleus	7.41	1.49
CDY49671	Canola	mitochondrion, nucleus	5.56	1.27
CDY12872	Canola	nucleus	5.56	1.16
CDY50510	Canola	nucleus	3.7	0.87
CDY28103	Canola	plastid	3.7	0.81
CDX93668	Canola	nucleus	1.85	0.41

Protein Annotations

EnsemblPlants:CDY12742	EnsemblPlantsGene:GSBRNA2T00070317001	ProteinID:CDY12742	ProteinID:CDY12742.1	UniParc:UPI0004EDBF00	UniProt:A0A078FIF9
MapMan:35.2	:	:	:	:	:

Description

BnaC04g28990DBnaC04g28990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIF9]

Coordinates

chrLK032026:+:550756..550920

Molecular Weight (calculated)

5741.3 Da

IEP (calculated)

2.925

GRAVY (calculated)

-0.239

Length

54 amino acids

Sequence
(BLAST)

1: MNCVASADGF MEANSIQETN SSALNSVACD DDASAALNEE DTNFSDFLTQ FLQS

Best Arabidopsis Sequence Match ( AT5G63940.1 )
(BLAST)

001: MKPTGEGGGE VAGAVAEGSA LLIVGVKPDE WSREVLTWSL VNVARPGDRI VALHVLDYSL EGSTSLISLV RNFDTMLGVY ESFCNLKQVD LKLKVFRGKS
101: ARKVLVQEVK SCGATSLIVG SSRKHHTIRS SASLAKYCAR NLAKDVSVFA VKSGKIMFRR VPNTNGADGP QMNIPSLVCG SPDIAIEAAK IGNSFSPART
201: SSRWTRTSRS SSLQSPDSLG VDNLLALVPV QTNETDSGSL ESGPGWHFLR GLYGNNRKSW TKVSAKKAVL QWVSRLRGRH SETVIYLDRK RSDSGCDEDC
301: SSSIDGEDVS ISRFGSELMQ SPLSPFIGSN NIPEELEGLH EKYSSTCRLF TYEEVLSITS NFASENLVGE GGNSYVYRGD LPDGRELAVK ILKPCLDVLK
401: EFILEIEVIT SVHHKNIVSL FGFCFENNNL MLVYDYLPRG SLEENLHGNR KDAKKFGWME RYKVAVGVAE ALDYLHNTHD PEVIHRDVKS SNVLLADDFE
501: PQLSDFGFAS LASSTSQHVA GGDIAGTFGY LAPEYFMHGK VTDKIDVYAF GVVLLELISG RKPICVDQSK GQESLVLWAN PILDSGKFAQ LLDPSLENDN
601: SNDLIEKLLL AATLCIKRTP HDRPQIGLVL KILQGEEEAT EWGKQQVRAS EDVSAYLTNI ESHINLALLD LEDDAASDSS PEASSISVEE YLKGRWSRTA
701: SFNFN

Arabidopsis Description

At5g63940 [Source:UniProtKB/TrEMBL;Acc:Q9LVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.