Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G26865.1 | Thale cress | nucleus | 46.64 | 82.54 |
| AT5G27050.1 | Thale cress | nucleus | 44.39 | 82.5 |
| AT5G27944.1 | Thale cress | nucleus | 79.37 | 79.02 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 54.26 | 64.71 |
| AT5G26950.1 | Thale cress | nucleus | 70.85 | 54.67 |
| AT5G27070.1 | Thale cress | nucleus | 69.96 | 54.36 |
| CDY63010 | Canola | plastid | 9.42 | 33.87 |
| Bra007138.1-P | Field mustard | nucleus | 35.43 | 28.11 |
| Bra020923.1-P | Field mustard | nucleus | 26.01 | 27.75 |
| Bra018741.1-P | Field mustard | nucleus | 32.74 | 27.65 |
| CDY63012 | Canola | cytosol | 24.66 | 27.5 |
| CDX73406 | Canola | plastid | 33.63 | 26.6 |
| CDX73409 | Canola | nucleus | 27.35 | 26.52 |
| CDX93682 | Canola | nucleus | 28.7 | 26.45 |
| CDX93744 | Canola | nucleus | 33.18 | 25.96 |
| Bra028019.1-P | Field mustard | nucleus | 32.74 | 25.61 |
| CDX93743 | Canola | nucleus | 29.15 | 24.71 |
| CDY40199 | Canola | nucleus | 28.7 | 24.52 |
| Bra004071.1-P | Field mustard | nucleus | 30.94 | 24.3 |
| CDX93708 | Canola | nucleus | 30.04 | 24.28 |
| AT4G02235.1 | Thale cress | nucleus | 21.08 | 23.98 |
| Bra028020.1-P | Field mustard | nucleus | 28.25 | 23.95 |
| CDY27890 | Canola | nucleus | 31.39 | 21.94 |
| Bra018767.1-P | Field mustard | nucleus | 30.04 | 21.9 |
| Bra015129.1-P | Field mustard | nucleus | 30.94 | 21.63 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 30.94 | 20.91 |
| AT5G40220.1 | Thale cress | nucleus | 29.6 | 20.37 |
| CDY28851 | Canola | nucleus | 24.66 | 19.37 |
| CDY56522 | Canola | nucleus | 20.18 | 19.31 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 29.15 | 19.12 |
| AT5G39810.1 | Thale cress | plastid | 26.91 | 18.24 |
| AT5G39750.1 | Thale cress | nucleus | 28.7 | 18.03 |
| AT5G38740.1 | Thale cress | nucleus | 33.18 | 17.37 |
| AT5G40120.1 | Thale cress | nucleus | 29.6 | 17.14 |
| AT5G65330.1 | Thale cress | nucleus | 26.01 | 17.01 |
| AT3G18650.1 | Thale cress | plastid | 29.15 | 16.84 |
| AT4G11250.1 | Thale cress | nucleus | 24.22 | 16.41 |
| Bra007139.1-P | Field mustard | nucleus | 11.66 | 15.29 |
| AT5G37415.1 | Thale cress | nucleus | 21.52 | 15.19 |
| CDY67867 | Canola | mitochondrion | 28.7 | 15.17 |
| CDY18533 | Canola | nucleus | 4.04 | 12.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832818 | ProteinID:AED93703.1 | Symbol:AGL89 | ArrayExpress:AT5G27580 |
| EnsemblPlantsGene:AT5G27580 | RefSeq:AT5G27580 | TAIR:AT5G27580 | RefSeq:AT5G27580-TAIR-G | EnsemblPlants:AT5G27580.1 | TAIR:AT5G27580.1 |
| EMBL:AY141226 | ProteinID:BAH30601.1 | EMBL:BT025291 | EMBL:DQ446991 | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198110.1 | PFAM:PF00319 |
| PO:PO:0025074 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | UniProt:Q7XJL1 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000162604 | SEG:seg | : |
Description
AGL89AGAMOUS-like 89 [Source:UniProtKB/TrEMBL;Acc:Q7XJL1]
Coordinates
chr5:+:9736525..9737322
Molecular Weight (calculated)
25591.3 Da
IEP (calculated)
8.879
GRAVY (calculated)
-0.778
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.