Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G388900.1 | Wheat | nucleus | 95.31 | 95.31 |
| CDY43476 | Canola | nucleus | 24.22 | 20.81 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 29.69 | 16.38 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 31.25 | 15.62 |
| TraesCSU01G075500.1 | Wheat | nucleus | 31.25 | 12.54 |
| CDX84180 | Canola | cytosol | 20.31 | 11.87 |
| KRH77315 | Soybean | nucleus | 37.5 | 11.21 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 51.56 | 10.95 |
| KRH28171 | Soybean | nucleus | 35.16 | 10.59 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 42.97 | 9.08 |
| CDY71414 | Canola | nucleus | 27.34 | 8.71 |
| KXG37542 | Sorghum | nucleus | 40.62 | 8.65 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 42.97 | 8.63 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 42.97 | 8.62 |
| CDX76587 | Canola | nucleus | 27.34 | 8.27 |
| Bra021078.1-P | Field mustard | nucleus | 27.34 | 8.24 |
| AT4G16845.1 | Thale cress | nucleus | 28.12 | 8.18 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 39.84 | 7.7 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 39.84 | 7.7 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 41.41 | 7.68 |
| OQU89244 | Sorghum | nucleus | 37.5 | 7.66 |
| Solyc03g093640.2.1 | Tomato | nucleus | 37.5 | 7.52 |
| CDX99960 | Canola | nucleus | 35.16 | 7.12 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 35.16 | 7.12 |
| CDY00460 | Canola | nucleus, plastid | 35.16 | 7.12 |
| Zm00001d020036_P002 | Maize | nucleus | 37.5 | 7.01 |
| AT5G51230.1 | Thale cress | nucleus | 34.38 | 6.97 |
| CDY16330 | Canola | nucleus | 33.59 | 6.8 |
| Bra022541.1-P | Field mustard | nucleus | 33.59 | 6.8 |
| KRG90126 | Soybean | nucleus | 32.03 | 6.74 |
| KRH33365 | Soybean | nucleus | 32.03 | 6.74 |
| CDX91573 | Canola | nucleus | 32.03 | 6.51 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 6.25 | 6.45 |
| Bra005316.1-P | Field mustard | nucleus | 11.72 | 6.33 |
| CDY33160 | Canola | nucleus | 22.66 | 6.3 |
| CDY35632 | Canola | cytosol | 20.31 | 5.75 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 15.62 | 5.31 |
| CDY42943 | Canola | nucleus | 18.75 | 5.16 |
| Bra040097.1-P | Field mustard | nucleus | 18.75 | 5.16 |
| Zm00001d034036_P003 | Maize | golgi | 23.44 | 4.93 |
| CDY31712 | Canola | nucleus | 11.72 | 4.3 |
| KRH34601 | Soybean | nucleus | 25.78 | 4.21 |
| CDY38857 | Canola | nucleus | 22.66 | 3.9 |
| CDY00458 | Canola | cytosol | 10.16 | 3.78 |
| Bra015201.1-P | Field mustard | cytosol | 10.16 | 3.78 |
| Bra029179.1-P | Field mustard | nucleus | 23.44 | 3.47 |
| CDX84179 | Canola | cytosol | 10.94 | 3.43 |
| AT2G35670.1 | Thale cress | nucleus | 18.75 | 3.18 |
| CDX75032 | Canola | mitochondrion, nucleus | 8.59 | 2.88 |
| Bra005262.1-P | Field mustard | mitochondrion | 8.59 | 2.88 |
| AT4G16810.1 | Thale cress | nucleus | 3.12 | 1.33 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G183300.1 | EnsemblPlantsGene:TraesCS4D01G183300 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:+:320585628..320593289
Molecular Weight (calculated)
14163.2 Da
IEP (calculated)
9.251
GRAVY (calculated)
-0.243
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRQPSTIQL SPNEQLAAEE TFKLHCKPVE LCIVIQKRAI DNPAFLQRCL RYMIQASRKK RNTRVGCLDC CLPVLSSASG RLDVIMGNGH SWPSAVLTPT
101: SSTYSSRTPL ASRACTVEGW WPNSPAGR
101: SSTYSSRTPL ASRACTVEGW WPNSPAGR
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.