Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015201.1-P | Field mustard | cytosol | 99.71 | 99.71 |
| TraesCSU01G224600.1 | Wheat | nucleus | 25.29 | 70.16 |
| TraesCSU01G194400.1 | Wheat | nucleus | 25.29 | 70.16 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 20.93 | 64.86 |
| CDY00460 | Canola | nucleus, plastid | 56.4 | 30.7 |
| CDX99960 | Canola | nucleus | 54.94 | 29.91 |
| CDY16330 | Canola | nucleus | 51.45 | 28.01 |
| CDX91573 | Canola | nucleus | 51.16 | 27.94 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 44.19 | 25.08 |
| CDY71414 | Canola | nucleus | 29.07 | 24.88 |
| KXG37542 | Sorghum | nucleus | 43.02 | 24.63 |
| Zm00001d034036_P003 | Maize | golgi | 42.44 | 23.97 |
| CDX76587 | Canola | nucleus | 29.36 | 23.88 |
| OQU89244 | Sorghum | nucleus | 43.31 | 23.76 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 41.28 | 23.55 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 41.28 | 23.51 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 40.7 | 23.33 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 42.73 | 23.08 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 40.41 | 22.94 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 42.44 | 22.88 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 42.44 | 22.88 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 42.44 | 22.22 |
| Zm00001d020036_P002 | Maize | nucleus | 43.31 | 21.75 |
| Os04t0162100-01 | Rice | nucleus | 38.66 | 21.31 |
| KXG25810 | Sorghum | nucleus | 33.43 | 18.98 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 34.59 | 18.54 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 33.72 | 17.9 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 33.43 | 17.4 |
| AT4G16810.1 | Thale cress | nucleus | 14.83 | 17.0 |
| CDY42943 | Canola | nucleus | 22.97 | 16.99 |
| CDY31712 | Canola | nucleus | 15.99 | 15.76 |
| CDY35632 | Canola | cytosol | 20.35 | 15.49 |
| CDX75032 | Canola | mitochondrion, nucleus | 15.7 | 14.14 |
| CDY33160 | Canola | nucleus | 18.6 | 13.91 |
| CDX84179 | Canola | cytosol | 16.28 | 13.73 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 3.78 | 10.16 |
| CDY43476 | Canola | nucleus | 4.36 | 10.07 |
| CDX84180 | Canola | cytosol | 6.4 | 10.05 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 3.49 | 9.38 |
| CDY38857 | Canola | nucleus | 9.59 | 4.44 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 2.91 | 3.91 |
Protein Annotations
| EnsemblPlants:CDY00458 | EnsemblPlantsGene:GSBRNA2T00110145001 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | PFAM:PF09733 |
| ProteinID:CDY00458 | ProteinID:CDY00458.1 | SEG:seg | UniParc:UPI0004EDB9A2 | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 |
Description
BnaA10g08150D
Coordinates
chrLK031919:-:234838..237844
Molecular Weight (calculated)
40066.5 Da
IEP (calculated)
7.617
GRAVY (calculated)
-0.384
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVELLRFWE ARNIKSGELM GVDMIFVDYQ VFHSQTHRMP MNTRVSLLSA SKDAMRTFDL GDDDILVMFF YGFKPVKTWT PLLNVFRRGI LELMYKVQMQ
101: FFEDAKLMRG GHYMNLMSSL KPPSSTCSIK ETTQRAYAHS VRCEKNRIAP GKHCERIGVA ESSGQRVPPG TSPADVQSCV DPDSVQSMVG STMLQFAKTR
201: KLSIERSELR NRSLLQKREF FHSHRAQPMA LEQVLSDRDS EDEVDDDVAD FEDRRMLDDF VDVTKDEKQM MHMWNSFVRK QRVLADGHIP WACEAFSRLH
301: GSIMVRIPHL IWCWRMFMVK LWNHGLLDAR TMHNCNVFLE QLPN
101: FFEDAKLMRG GHYMNLMSSL KPPSSTCSIK ETTQRAYAHS VRCEKNRIAP GKHCERIGVA ESSGQRVPPG TSPADVQSCV DPDSVQSMVG STMLQFAKTR
201: KLSIERSELR NRSLLQKREF FHSHRAQPMA LEQVLSDRDS EDEVDDDVAD FEDRRMLDDF VDVTKDEKQM MHMWNSFVRK QRVLADGHIP WACEAFSRLH
301: GSIMVRIPHL IWCWRMFMVK LWNHGLLDAR TMHNCNVFLE QLPN
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.