Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G224600.1 | Wheat | nucleus | 100.0 | 100.0 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 75.81 | 75.81 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 54.84 | 61.26 |
| CDY00458 | Canola | cytosol | 70.16 | 25.29 |
| Bra015201.1-P | Field mustard | cytosol | 69.35 | 25.0 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 75.81 | 24.93 |
| KRH28171 | Soybean | nucleus | 70.97 | 20.71 |
| KRH77315 | Soybean | nucleus | 70.97 | 20.56 |
| Bra005316.1-P | Field mustard | nucleus | 30.65 | 16.03 |
| CDY71414 | Canola | nucleus | 45.97 | 14.18 |
| AT5G51230.1 | Thale cress | nucleus | 71.77 | 14.1 |
| KRH33365 | Soybean | nucleus | 68.55 | 13.98 |
| CDX91573 | Canola | nucleus | 70.97 | 13.97 |
| Bra022541.1-P | Field mustard | nucleus | 70.97 | 13.92 |
| CDY16330 | Canola | nucleus | 70.97 | 13.92 |
| CDX99960 | Canola | nucleus | 70.97 | 13.92 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 70.97 | 13.92 |
| CDY00460 | Canola | nucleus, plastid | 70.97 | 13.92 |
| KRG90126 | Soybean | nucleus | 67.74 | 13.82 |
| AT4G16810.1 | Thale cress | nucleus | 33.06 | 13.67 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 72.58 | 13.6 |
| Solyc03g093640.2.1 | Tomato | nucleus | 69.35 | 13.48 |
| CDX76587 | Canola | nucleus | 45.97 | 13.48 |
| Bra021078.1-P | Field mustard | nucleus | 45.97 | 13.41 |
| AT4G16845.1 | Thale cress | nucleus | 45.16 | 12.73 |
| CDY31712 | Canola | nucleus | 30.65 | 10.89 |
| CDY35632 | Canola | cytosol | 37.1 | 10.18 |
| CDY42943 | Canola | nucleus | 36.29 | 9.68 |
| Bra040097.1-P | Field mustard | nucleus | 36.29 | 9.68 |
| CDX84179 | Canola | cytosol | 29.84 | 9.07 |
| CDX75032 | Canola | mitochondrion, nucleus | 26.61 | 8.64 |
| Bra005262.1-P | Field mustard | mitochondrion | 26.61 | 8.64 |
| CDY33160 | Canola | nucleus | 26.61 | 7.17 |
| AT2G35670.1 | Thale cress | nucleus | 31.45 | 5.17 |
| KRH34601 | Soybean | nucleus | 31.45 | 4.97 |
| Bra029179.1-P | Field mustard | nucleus | 21.77 | 3.12 |
| CDX84180 | Canola | cytosol | 4.84 | 2.74 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 4.84 | 2.59 |
| CDY38857 | Canola | nucleus | 5.65 | 0.94 |
| CDY43476 | Canola | nucleus | 0.0 | 0.0 |
| TraesCSU01G075500.1 | Wheat | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCSU01G194400.1 | EnsemblPlantsGene:TraesCSU01G194400 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:291556919..291558207
Molecular Weight (calculated)
14662.5 Da
IEP (calculated)
4.953
GRAVY (calculated)
-0.491
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEQVFSDR DSEDEVDDDI ADFEDKRMLE DFVDVTDHEK LIMHMWNSFV RKQRVLADGH IPWACEAFSR LHGKHLVQNP PLLWSWRFLM IKLWNHSLLD
101: ARTMNVCGTI LQGYQNESSD PKKM
101: ARTMNVCGTI LQGYQNESSD PKKM
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
Arabidopsis Description
EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.