Factsheet for VIT_02s0234g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G183300.1	Wheat	nucleus	16.38	29.69
TraesCS5D01G388900.1	Wheat	nucleus	15.09	27.34
TraesCS3B01G073800.1	Wheat	nucleus	28.88	26.17
VIT_16s0013g00860.t01	Wine grape	nucleus	49.14	17.22
Os09t0306800-01	Rice	cytosol, nucleus	39.22	15.02
KXG37542	Sorghum	nucleus	38.36	14.81
TraesCS2D01G000600.1	Wheat	cytosol	38.36	14.76
TraesCS2A01G000100.1	Wheat	nucleus	38.36	14.74
TraesCS2B01G023900.1	Wheat	cytosol	37.93	14.67
HORVU2Hr1G000010.32	Barley	nucleus	37.5	14.36
OQU89244	Sorghum	nucleus	37.93	14.04
TraesCS5A01G179600.1	Wheat	nucleus	37.5	13.64
TraesCS5D01G184200.2	Wheat	nucleus	37.5	13.64
HORVU5Hr1G054730.1	Barley	nucleus	37.07	13.5
Os04t0162100-01	Rice	nucleus	36.21	13.46
TraesCS5B01G177400.2	Wheat	nucleus	37.93	13.39
Zm00001d020036_P002	Maize	nucleus	37.07	12.55
KXG25810	Sorghum	nucleus	31.9	12.21
Zm00001d034036_P003	Maize	golgi	31.9	12.15
TraesCS2A01G002500.1	Wheat	nucleus	33.62	12.04
TraesCS2B01G020400.3	Wheat	nucleus	32.33	11.68
HORVU2Hr1G000390.20	Barley	nucleus	32.76	11.5
CDY38857	Canola	nucleus	28.88	9.01
Bra029179.1-P	Field mustard	nucleus	30.17	8.1
VIT_00s1675g00010.t01	Wine grape	cytosol	3.88	7.26
VIT_02s0234g00050.t01	Wine grape	nucleus	11.64	7.16
GSMUA_Achr2P11140_001	Banana	cytosol	2.59	5.41
TraesCSU01G194400.1	Wheat	nucleus	2.59	4.84
TraesCSU01G224600.1	Wheat	nucleus	2.59	4.84

Protein Annotations

MapMan:35.1	ProteinID:CCB50067	ProteinID:CCB50067.1	UniProt:F6HCX2	EMBL:FN595528	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0031490	PANTHER:PTHR22597
PANTHER:PTHR22597:SF0	UniParc:UPI0002109E0A	ArrayExpress:VIT_02s0234g00020	EnsemblPlantsGene:VIT_02s0234g00020	EnsemblPlants:VIT_02s0234g00020.t01	unigene:Vvi.8488
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:19318..35046

Molecular Weight (calculated)

26357.3 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.169

Length

232 amino acids

Sequence
(BLAST)

001: MCHQNSCVHF SAEEAVAAEE SLLIYCKPVE LYNILQCRAL QNPSFLQRCL RYKIQARRKQ RLQMTISLSG TIKDGMQAKD LLPVYILMAK PVSDTEVAAG
101: KQHSEVYRLN RACKLSSFTE FEGWRRAEAN FILPEMNKLS LDVKAGKLTI LLVSCGTILS ISHQVSWRLD ISSTSAWEKK MVSLMSCRCD ILNIVPLNLK
201: ALNKTRILSP LNDPIHDINK NSKEKMKDDH FA

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.