Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G184200.2 | Wheat | nucleus | 99.84 | 99.84 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 96.39 | 96.55 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 98.28 | 95.43 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 77.59 | 81.68 |
| KXG37542 | Sorghum | nucleus | 75.39 | 80.03 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 73.82 | 77.98 |
| OQU89244 | Sorghum | nucleus | 76.02 | 77.35 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 14.42 | 74.19 |
| Zm00001d034036_P003 | Maize | golgi | 70.38 | 73.73 |
| Zm00001d020036_P002 | Maize | nucleus | 75.24 | 70.07 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 54.55 | 53.7 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 54.7 | 52.72 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 30.41 | 51.46 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 52.66 | 50.76 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 54.08 | 50.0 |
| KRH77315 | Soybean | nucleus | 33.23 | 49.53 |
| KRH28171 | Soybean | nucleus | 32.92 | 49.41 |
| AT5G51230.1 | Thale cress | nucleus | 48.75 | 49.29 |
| Solyc03g093640.2.1 | Tomato | nucleus | 49.22 | 49.22 |
| CDY16330 | Canola | nucleus | 48.12 | 48.58 |
| Bra022541.1-P | Field mustard | nucleus | 48.12 | 48.58 |
| CDX91573 | Canola | nucleus | 47.81 | 48.41 |
| CDY43476 | Canola | nucleus | 11.29 | 48.32 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 47.81 | 48.26 |
| CDY00460 | Canola | nucleus, plastid | 47.81 | 48.26 |
| CDX99960 | Canola | nucleus | 47.65 | 48.1 |
| KRH33365 | Soybean | nucleus | 44.67 | 46.88 |
| KRG90126 | Soybean | nucleus | 44.67 | 46.88 |
| CDY00458 | Canola | cytosol | 22.88 | 42.44 |
| Bra015201.1-P | Field mustard | cytosol | 22.73 | 42.15 |
| CDY71414 | Canola | nucleus | 24.76 | 39.3 |
| AT4G16845.1 | Thale cress | nucleus | 26.02 | 37.73 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 13.64 | 37.5 |
| CDX76587 | Canola | nucleus | 24.61 | 37.12 |
| Bra021078.1-P | Field mustard | nucleus | 24.45 | 36.71 |
| CDX84180 | Canola | cytosol | 9.4 | 27.4 |
| Bra005316.1-P | Field mustard | nucleus | 9.72 | 26.16 |
| CDY42943 | Canola | nucleus | 18.81 | 25.81 |
| Bra040097.1-P | Field mustard | nucleus | 18.81 | 25.81 |
| CDY35632 | Canola | cytosol | 18.18 | 25.66 |
| CDY33160 | Canola | nucleus | 15.83 | 21.96 |
| CDY31712 | Canola | nucleus | 11.91 | 21.78 |
| KRH34601 | Soybean | nucleus | 26.18 | 21.3 |
| CDY38857 | Canola | nucleus | 23.67 | 20.3 |
| Bra029179.1-P | Field mustard | nucleus | 27.43 | 20.25 |
| CDX75032 | Canola | mitochondrion, nucleus | 11.76 | 19.63 |
| Bra005262.1-P | Field mustard | mitochondrion | 11.76 | 19.63 |
| CDX84179 | Canola | cytosol | 12.07 | 18.87 |
| AT4G16810.1 | Thale cress | nucleus | 8.46 | 18.0 |
| AT2G35670.1 | Thale cress | nucleus | 15.99 | 13.51 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G179600.1 | EnsemblPlantsGene:TraesCS5A01G179600 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:377914093..377927034
Molecular Weight (calculated)
72025.4 Da
IEP (calculated)
6.682
GRAVY (calculated)
-0.416
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLPLPARD AADAGCEFSY PQSADQMRQQ QLRARLSPDE QLAAEESFAL YCKPVELYNI IQRRAIRNPA FLQRCLHYKI HASRKKRIQI TVSLSRGTNT
101: ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTA FSEFGNKGRT KATFIIPDIK NLSTSRACNL NIILISCVSE GQVGENRGEH NCSVDHVEGS
201: ALQKLEGKCF WGKIPIDLLG SSLENCVTLN LGHTVELASA VSMSPSFLEP KFMEQDSCLT FCSHKVDATG SYQLQVGISA QEAGAKDMSE SPYSSYSYSG
301: VPPSSLPHII RLRAGNVLFN FKYYNNTMQK TEVTEDFACP FCLVKCGSYK GLGCHLNSSH DLFHFEFWIS EECQAVNVSL KTDVWRTELV AEGVDPRHQT
401: FSYSSRFKKR RRLGMLGTTA EKISHVHPHI MDSDSPEDAQ AVSEDDFVQR EEDDISAPRA SVDPAQSLHG SNLSPPTVLQ FGKTRKLSAE RADPRNRQLL
501: QKRQFFHSHR AQPMALEQVF SDRDSEDEVD DDIADFEDKR MLEDFVDVTD DEKLIMHMWN SFVRKQRVLA DGHIPWACEA FSRLHGKHLV QNPPLLWSWR
601: FLMIKLWNHS LLDARAMNVC GTILQGYQNE SGSDPKKM
101: ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTA FSEFGNKGRT KATFIIPDIK NLSTSRACNL NIILISCVSE GQVGENRGEH NCSVDHVEGS
201: ALQKLEGKCF WGKIPIDLLG SSLENCVTLN LGHTVELASA VSMSPSFLEP KFMEQDSCLT FCSHKVDATG SYQLQVGISA QEAGAKDMSE SPYSSYSYSG
301: VPPSSLPHII RLRAGNVLFN FKYYNNTMQK TEVTEDFACP FCLVKCGSYK GLGCHLNSSH DLFHFEFWIS EECQAVNVSL KTDVWRTELV AEGVDPRHQT
401: FSYSSRFKKR RRLGMLGTTA EKISHVHPHI MDSDSPEDAQ AVSEDDFVQR EEDDISAPRA SVDPAQSLHG SNLSPPTVLQ FGKTRKLSAE RADPRNRQLL
501: QKRQFFHSHR AQPMALEQVF SDRDSEDEVD DDIADFEDKR MLEDFVDVTD DEKLIMHMWN SFVRKQRVLA DGHIPWACEA FSRLHGKHLV QNPPLLWSWR
601: FLMIKLWNHS LLDARAMNVC GTILQGYQNE SGSDPKKM
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
Arabidopsis Description
EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.