Factsheet for Solyc03g093640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079390.2.1
Solyc01g104510.2.1
Solyc03g044380.2.1
Solyc06g009020.2.1
Solyc06g009040.2.1
Solyc07g006720.2.1
Solyc07g064090.2.1
Solyc09g074850.2.1
Solyc10g083440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	Solyc06g009020.2.1	AT1G02930.1	23778966
AT5G51230.1	Solyc06g009040.2.1	AT1G02930.1	23778966
AT5G51230.1	Solyc09g074850.2.1	AT1G02930.1	23778966
AT5G51230.1	Solyc07g006720.2.1	AT1G30530.1	23778966
AT5G51230.1	Solyc10g083440.1.1	AT1G30530.1	23778966
AT5G51230.1	Solyc03g044380.2.1	AT2G23380.1	15456723
AT5G51230.1	Solyc07g064090.2.1	AT3G20740.1	23778966
AT5G51230.1	Solyc01g079390.2.1	AT4G02020.1	15456723
AT5G51230.1	Solyc01g079390.2.1	AT4G02020.1	23778966
AT5G51230.1	Solyc01g104510.2.1	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G194400.1	Wheat	nucleus	13.48	69.35
TraesCSU01G224600.1	Wheat	nucleus	13.48	69.35
VIT_16s0013g00860.t01	Wine grape	nucleus	66.93	64.5
GSMUA_Achr2P11140_001	Banana	cytosol	11.13	63.96
Bra015200.1-P	Field mustard	nucleus, plastid	58.62	59.18
CDX99960	Canola	nucleus	58.62	59.18
CDY00460	Canola	nucleus, plastid	58.62	59.18
AT5G51230.1	Thale cress	nucleus	57.21	57.84
KRH33365	Soybean	nucleus	53.76	56.41
CDX91573	Canola	nucleus	55.02	55.71
KRG90126	Soybean	nucleus	52.98	55.59
CDY16330	Canola	nucleus	54.86	55.38
Bra022541.1-P	Field mustard	nucleus	54.86	55.38
Os09t0306800-01	Rice	cytosol, nucleus	49.53	52.15
KXG37542	Sorghum	nucleus	48.9	51.91
TraesCS2B01G023900.1	Wheat	cytosol	47.81	50.83
TraesCS2D01G000600.1	Wheat	cytosol	47.81	50.58
TraesCS2A01G000100.1	Wheat	nucleus	47.65	50.33
HORVU5Hr1G054730.1	Barley	nucleus	49.84	49.92
OQU89244	Sorghum	nucleus	48.59	49.44
TraesCS5A01G179600.1	Wheat	nucleus	49.22	49.22
TraesCS5D01G184200.2	Wheat	nucleus	49.06	49.06
HORVU2Hr1G000010.32	Barley	nucleus	46.4	48.84
Zm00001d034036_P003	Maize	golgi	46.55	48.77
TraesCS5B01G177400.2	Wheat	nucleus	49.53	48.1
Zm00001d020036_P002	Maize	nucleus	48.75	45.4
Os04t0162100-01	Rice	nucleus	42.63	43.59
KXG25810	Sorghum	nucleus	39.66	41.75
TraesCS2B01G020400.3	Wheat	nucleus	41.22	40.97
TraesCS2A01G002500.1	Wheat	nucleus	41.38	40.74
HORVU2Hr1G000390.20	Barley	nucleus	41.07	39.64
TraesCS3B01G073800.1	Wheat	nucleus	15.67	39.06
TraesCS4D01G183300.1	Wheat	nucleus	7.52	37.5
TraesCS5D01G388900.1	Wheat	nucleus	7.21	35.94
KRH34601	Soybean	nucleus	29.47	23.98

Protein Annotations

MapMan:12.3.3.1.1.3	MapMan:15.5.15	UniProt:A7Y7X7	EMBL:DQ869244	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006349	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0031490	GO:GO:0040029	PFAM:PF09733	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0
InterPro:Polycomb_protein_VEFS-Box	EnsemblPlantsGene:Solyc03g093640.2	EnsemblPlants:Solyc03g093640.2.1	UniParc:UPI00015C08DE	SEG:seg	:

Description

Embryonic flower 2 [Source:UniProtKB/TrEMBL;Acc:A7Y7X7]

Coordinates

chr3:-:55178355..55208511

Molecular Weight (calculated)

72421.8 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.385

Length

638 amino acids

Sequence
(BLAST)

001: MPGIPLVARE TTNYTCYCSY STATDSMCRQ DSATHLSAEE EIAAEESLSS YCKPVELYNI LQRRAVRNPS FLQRCLQYKI QAKHKRRIQM TISVPATVSD
101: ESQVQNLFPL GVILAKPLSS AAAAEGHSAV YQFKRACMST SFSGVDGINR AQAKFILPEM NKLSAEIRAG SLVILFVSFA ELARDRGDIS SFPLNLEGHC
201: LLGRMPMELL HLLWDKSPNL SLGERAEMWS TVDLNPCFMK TSSLDKDRHI SFEYPRSSAA LATIQQLQVK IASEEAFARE RTRYDSFSYD DIPSTSLARI
301: IRLRTGNVVF NYMYYNNKLQ RTEVTEDFTC PFCLVKCVSF KGLRYHLCSS HDLFKFEFWV NEEYQAVNVS VRSEMWRSEI VADGVDPKQQ TFFFCSKPLR
401: RREQPDLVQN SKHVHPLVLD SDFPSMNDLN GRTNGVADAV ECDPSSSNGA SVPSSGNLYT DPDSVQSASG STLAPPALLQ FAKSRKLSVE RSDPRNRALL
501: QKRQFFHSHR AQPMALEQVL SDRDSEDEVD DDVADLEDRR MLDDFVDVTK DEKQVMHLWN SFVRKQRVLA DGHIPWACEA FSKLHGQRFA QAPATLCRCW
601: RLFMMKLWNH GLVDARTINN CNLILEQFQN QDSDSTRS

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.