Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061016 | Potato | cytosol | 99.53 | 99.53 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 94.34 | 94.34 |
| KRH42369 | Soybean | nucleus | 91.27 | 91.06 |
| AT5G58230.1 | Thale cress | nucleus | 90.8 | 90.8 |
| KRH58491 | Soybean | nucleus | 90.8 | 90.59 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 88.68 | 88.89 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 23.82 | 86.32 |
| Os03t0640100-01 | Rice | cytosol | 86.56 | 85.75 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 86.56 | 85.75 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 45.05 | 85.65 |
| TraesCSU01G072700.1 | Wheat | nucleus | 86.32 | 85.51 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 86.32 | 85.51 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 86.32 | 84.92 |
| Zm00001d033247_P001 | Maize | nucleus | 85.85 | 84.45 |
| CDY02805 | Canola | nucleus | 80.9 | 81.86 |
| CDY43875 | Canola | nucleus | 81.84 | 81.46 |
| Zm00001d013702_P001 | Maize | nucleus | 82.08 | 80.74 |
| Bra002667.1-P | Field mustard | nucleus | 79.48 | 79.11 |
| CDY62688 | Canola | nucleus | 79.48 | 79.11 |
| Bra020379.1-P | Field mustard | cytosol | 76.42 | 77.88 |
| CDY32715 | Canola | nucleus | 76.42 | 77.88 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 76.42 | 77.14 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 85.61 | 59.7 |
| CDX88663 | Canola | nucleus | 88.21 | 58.8 |
| CDY58569 | Canola | cytosol | 88.21 | 58.8 |
| Solyc01g111590.2.1 | Tomato | cytosol | 53.3 | 56.08 |
| Solyc03g121580.2.1 | Tomato | nucleus | 32.55 | 30.0 |
| Solyc07g039330.2.1 | Tomato | nucleus | 25.0 | 28.12 |
| Solyc07g039320.2.1 | Tomato | nucleus | 8.25 | 23.03 |
| Solyc03g062940.2.1 | Tomato | cytosol | 16.51 | 22.15 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 20.52 | 21.91 |
| Solyc07g039200.2.1 | Tomato | nucleus | 23.35 | 21.43 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.64 | 20.73 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.92 | 20.05 |
| Solyc05g014070.1.1 | Tomato | cytosol, mitochondrion, nucleus | 3.54 | 12.71 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | EMBL:AF016845 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:O22466 | PFAM:PF00400 |
| PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc01g104510.2 | EnsemblPlants:Solyc01g104510.2.1 | UniParc:UPI000012F60C |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
MSI1WD-40 repeat-containing protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22466]
Coordinates
chr1:-:92972782..92977714
Molecular Weight (calculated)
48319.4 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.559
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDEDEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSENEPNYL MLAQVQLPLE DAENDARHYD
101: DDRSEFGGFG CANGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLRLRGHSTE GYGLSWSQFK QGHLLSGSDD
201: SHICLWDINA TPKNKALEAM QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLHVWDLRTP SVTKPIQSVV AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKISTAL HTLDCHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVV ASVAEDNILQ
401: IWQMAENIYH DEDDLPGDDA PKGP
101: DDRSEFGGFG CANGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLRLRGHSTE GYGLSWSQFK QGHLLSGSDD
201: SHICLWDINA TPKNKALEAM QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLHVWDLRTP SVTKPIQSVV AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKISTAL HTLDCHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVV ASVAEDNILQ
401: IWQMAENIYH DEDDLPGDDA PKGP
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.