Factsheet for Solyc05g025630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014070.1.1	Tomato	cytosol, mitochondrion, nucleus	23.54	92.37
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	75.38	92.08
Solyc05g014090.1.1	Tomato	mitochondrion	74.3	86.65
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	47.52	72.13
Solyc07g039200.2.1	Tomato	nucleus	70.41	70.56
VIT_11s0016g02270.t01	Wine grape	nucleus	69.76	68.14
KRH58776	Soybean	nucleus	68.03	66.6
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	65.23	64.53
KRH42676	Soybean	nucleus	67.6	63.36
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	61.77	60.98
CDY48712	Canola	plastid	61.56	60.51
CDY03357	Canola	plastid	61.77	60.47
CDY21659	Canola	nucleus	61.77	60.47
CDX81935	Canola	nucleus	61.77	60.21
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	33.69	57.56
Os12t0132400-01	Rice	nucleus	19.01	57.52
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	59.4	57.41
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.61	57.26
TraesCS4B01G131200.1	Wheat	nucleus	59.61	57.26
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.61	57.26
Bra040681.1-P	Field mustard	cytosol	44.71	57.18
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	58.96	57.11
Os11t0134500-01	Rice	nucleus	57.24	56.99
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	59.18	56.85
Zm00001d010850_P003	Maize	plasma membrane	58.96	56.76
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.32	55.9
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	58.1	55.69
CDY35872	Canola	cytosol, nucleus, plastid	39.96	54.41
CDX82701	Canola	nucleus	45.57	54.38
OQU82815	Sorghum	mitochondrion	53.13	53.59
Solyc01g104510.2.1	Tomato	nucleus	20.73	22.64
Solyc01g111590.2.1	Tomato	cytosol	19.44	22.33
Solyc03g121580.2.1	Tomato	nucleus	20.09	20.22
Solyc07g039330.2.1	Tomato	nucleus	16.2	19.89
Solyc03g062940.2.1	Tomato	cytosol	13.39	19.62
Solyc07g039320.2.1	Tomato	nucleus	3.67	11.18
Os12t0132300-02	Rice	cytosol	0.86	2.19
Os11t0134400-00	Rice	cytosol	0.86	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BZV1	PFAM:PF00400	PFAM:PF12265
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc05g025630.1	EnsemblPlants:Solyc05g025630.1.1	UniParc:UPI0002765CCF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:35282617..35285573

Molecular Weight (calculated)

51560.5 Da

IEP (calculated)

4.983

GRAVY (calculated)

-0.386

Length

463 amino acids

Sequence
(BLAST)

001: MVRRLKKPRN AKRKNKEVEG LSDSVASKVW EAGVDKLEEG EELQCDPSAY NALHAFHIGW PCMSFDVLRD SLGMVRTEFS HTAYCVAGTQ VSFLHSMLLP
101: FIHCSPFLNK RASNSIGIFK LSNIFGKRRD LVPTKTGDDD NMDSESSDSD DDDNEEKEVV EVVLQLRKVF HEGCVNRIRA MTQNPHIVAS WSDTGHVQVW
201: DFSSLLNALA EAESDCSQGV SAVSNHSPLF KFGGHKDEGY AIDWSPHVPG RLVSGDCKNS IHLWEPTSDT TWNVEDPFIG HSASVEDLQW SPVDPCVFAS
301: CSVDGSIKIW DTRKKRSPTA TIKAYKTDVN VISWNRGESC MLAFGSDDGD FSIQDLRVVK CGLNSPHHEA ASTIAVSSSD NQLTIWDLSL ERDEEEEAEF
401: KVKMKEQVNV PTDLPPQLLL IHQGQKDLKE LHWHPQIPGM VISIAADGFN ILMPSNIENV LPA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.