CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	86.27	82.67
Os12t0132400-01	Rice	nucleus	27.23	81.7
Os11t0134500-01	Rice	nucleus	75.6	74.62
TraesCS4B01G131200.1	Wheat	nucleus	76.03	72.41
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	76.03	72.41
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	75.38	71.78
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	75.16	71.58
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.93	66.46
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	69.93	66.46
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	67.54	66.24
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	43.14	64.92
VIT_11s0016g02270.t01	Wine grape	nucleus	64.49	62.45
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.6	61.99
KRH58776	Soybean	nucleus	63.4	61.52
PGSC0003DMT400034220	Potato	nucleus	61.0	59.7
Solyc05g014090.1.1	Tomato	mitochondrion	51.42	59.45
KRH42676	Soybean	nucleus	63.18	58.7
Solyc07g039200.2.1	Tomato	nucleus	58.61	58.23
CDY48712	Canola	plastid	59.48	57.96
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	59.04	57.78
CDY03357	Canola	plastid	59.48	57.72
CDY21659	Canola	nucleus	58.61	56.87
CDX81935	Canola	nucleus	58.61	56.63
CDY35872	Canola	cytosol, nucleus, plastid	41.39	55.88
CDX82701	Canola	nucleus	46.62	55.15
Bra040681.1-P	Field mustard	cytosol	42.92	54.42
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	53.59	53.13
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	43.57	52.77
EER97107	Sorghum	cytosol	21.35	24.32
EES01357	Sorghum	nucleus	22.66	22.96
EES04830	Sorghum	cytosol, peroxisome, plastid	15.9	22.74
OQU91278	Sorghum	cytosol, nucleus, plastid	22.22	16.78
Os12t0132300-02	Rice	cytosol	1.53	3.83
Os11t0134400-00	Rice	cytosol	1.53	3.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1Z5RHA4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU82815	ProteinID:OQU82815	ProteinID:OQU82815.1	PFAM:PF00400
PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320
EnsemblPlantsGene:SORBI_3005G024400	SUPFAM:SSF50978	UniParc:UPI000B8BAA00	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2205170..2215283

Molecular Weight (calculated)

50225.8 Da

IEP (calculated)

5.535

GRAVY (calculated)

-0.336

Length

459 amino acids

Sequence
(BLAST)

001: MGRKIKRKAG VKKQAKRIAP SSSSSNPAVA SGPAKCFVLG FGIGWSCLSF DVVHDQLGLV RSEFPHTLYG VAGTQADKAS RNYIGIFKLS NISGKKREPI
101: PSSAIDGDSD TDVDSESSSD GEDEETNEDT KPILHLKKVA HAGCVNRIRS MTQKPHICAT WGATGHVQVW DLSSILNSLA ESATPAPKED DVIHRQTPVK
201: VFSGHKAEGY AVDWSPLVTG SLFLVCDCNK SIHLWEPTPS NWNVDVNLFV GHSASVEDLQ WSPTEADVFA SCSADGTISI WDIRTGKEPC ISIKAHKADV
301: NVISWNRLAS RMIASGCDDG SFSVRDLRFI QEDSLVAHFE YHKKAITSIE WSPHEASSLA VTSEDHQLTI WDLSLERDAE EEAEFRAKMK EQANAPEDLP
401: PQLLFVHQGQ RDLKELHWHP QIPSMIISTA IDGFNVLMPS SIDTTIPSST DTTVASSEP

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.