Factsheet for VIT_11s0016g02270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58776	Soybean	nucleus	81.43	81.61
PGSC0003DMT400034220	Potato	nucleus	79.75	80.6
Os12t0132400-01	Rice	nucleus	25.53	79.08
Solyc07g039200.2.1	Tomato	nucleus	76.79	78.79
KRH42676	Soybean	nucleus	81.86	78.54
CDY48712	Canola	plastid	76.37	76.86
CDY03357	Canola	plastid	76.37	76.53
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	75.53	76.5
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	74.89	75.69
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.25	75.65
CDY21659	Canola	nucleus	75.32	75.48
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	48.52	75.41
CDX81935	Canola	nucleus	74.89	74.74
Bra040681.1-P	Field mustard	cytosol	55.7	72.93
Solyc05g014090.1.1	Tomato	mitochondrion	59.92	71.54
Os11t0134500-01	Rice	nucleus	69.2	70.54
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	68.14	69.76
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.89	69.71
TraesCS4B01G131200.1	Wheat	nucleus	70.89	69.71
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.89	69.71
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	55.7	69.66
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	70.46	69.29
CDX82701	Canola	nucleus	56.54	69.07
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	69.62	68.89
Zm00001d010850_P003	Maize	plasma membrane	68.99	67.98
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	68.35	67.78
CDY35872	Canola	cytosol, nucleus, plastid	47.89	66.76
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	66.46	65.22
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	66.46	65.22
OQU82815	Sorghum	mitochondrion	62.45	64.49
VIT_16s0013g01550.t01	Wine grape	nucleus	22.57	25.24
VIT_03s0038g02430.t01	Wine grape	cytosol	21.1	24.94
VIT_09s0002g02150.t01	Wine grape	nucleus	22.57	23.62
VIT_11s0016g02170.t01	Wine grape	nucleus	21.94	20.47
VIT_10s0003g01320.t01	Wine grape	cytosol	13.92	16.92
Os12t0132300-02	Rice	cytosol	0.84	2.19
Os11t0134400-00	Rice	cytosol	0.84	2.19

Protein Annotations

EntrezGene:100243951	wikigene:100243951	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI27918	ProteinID:CBI27918.3
UniProt:D7TB83	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100243951	wikigene:LOC100243951	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015C8A32
ArrayExpress:VIT_11s0016g02270	EnsemblPlantsGene:VIT_11s0016g02270	EnsemblPlants:VIT_11s0016g02270.t01	unigene:Vvi.12735	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002282252	RefSeq:XP_002282252.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:1850857..1854835

Molecular Weight (calculated)

51888.2 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.501

Length

474 amino acids

Sequence
(BLAST)

001: MVRSIKNPKK AKRKNKGSKK GEGSSSVPSL PTKVWQPGVD KLEEGEELQC DPSAYNSLHA FHVGWPCLSF DIVRDSLGLV RSEFPHTAYF VAGTQAEKAS
101: WNSIGIFKLS NISGKKRELV PTTKSTGDDS DMDGDGSDSD EDSENEEDGG SGTPILQMRK VAHEGCVNRI RAMTQNPHIC ASWADTGHVQ VWDFSSHLNA
201: LAESETDANQ GSTPAINQAP LVKFGGHKDE GYAIDWSPVV PGKLVTGDCK NCIYLWEPTS DATWKVDTNP FIGHTASVED LQWSPTEVHV FASCSVDGNI
301: AIWDTRLGRS PAASFKAHNA DVNVLSWNRL ASCMLASGSD DGTFSIRDLR LLKDGDSVVA HFEYHKHPIT SIEWSPHEAS TLAVSSSDNQ LTIWDLSLEK
401: DEEEEAEFRA QTKEQVNAPE DLPPQLLFVH QGQKDLKELH WHSQIPGMII STAADGFNVL MPSNIQNVLP SGNA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.