Factsheet for VIT_09s0002g02150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006393	Potato	nucleus	63.36	82.95
Solyc03g121580.2.1	Tomato	nucleus	83.44	82.17
EES01357	Sorghum	nucleus	79.91	79.91
Os01t0710000-01	Rice	nucleus	79.69	79.69
KRH23320	Soybean	endoplasmic reticulum	79.69	78.65
GSMUA_Achr4P08720_001	Banana	cytosol	70.2	78.13
Zm00001d052871_P001	Maize	cytosol	5.08	76.67
TraesCS3A01G250900.2	Wheat	cytosol	79.03	76.01
TraesCS3B01G280400.1	Wheat	nucleus	79.03	76.01
TraesCS3D01G251300.2	Wheat	nucleus	78.81	75.8
Zm00001d043683_P001	Maize	cytosol	32.23	70.87
HORVU3Hr1G066930.1	Barley	plastid	78.81	70.14
VIT_11s0016g02170.t01	Wine grape	nucleus	76.6	68.31
Zm00001d011705_P002	Maize	cytosol	77.92	67.88
GSMUA_Achr3P32330_001	Banana	cytosol	26.93	67.78
Zm00001d043682_P002	Maize	cytosol, plastid	76.38	65.41
KRH10009	Soybean	cytosol, mitochondrion, nucleus	56.07	64.3
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	30.91	60.87
GSMUA_Achr7P24160_001	Banana	nucleus	30.91	58.33
GSMUA_Achr7P09120_001	Banana	nucleus	57.84	57.58
Zm00001d050047_P001	Maize	nucleus	24.06	39.49
VIT_03s0038g02430.t01	Wine grape	cytosol	30.46	34.41
VIT_16s0013g01550.t01	Wine grape	nucleus	31.57	33.73
VIT_11s0016g02270.t01	Wine grape	nucleus	23.62	22.57
VIT_10s0003g01320.t01	Wine grape	cytosol	14.35	16.67

Protein Annotations

EntrezGene:100244563	wikigene:100244563	MapMan:12.2.1.3	Gene3D:2.130.10.10	ProteinID:CBI35947	ProteinID:CBI35947.3
UniProt:D7U001	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100244563	wikigene:LOC100244563	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001BE4B70
ArrayExpress:VIT_09s0002g02150	EnsemblPlantsGene:VIT_09s0002g02150	EnsemblPlants:VIT_09s0002g02150.t01	unigene:Vvi.13670	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_003632850	RefSeq:XP_003632850.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:1960596..1969321

Molecular Weight (calculated)

49836.4 Da

IEP (calculated)

5.526

GRAVY (calculated)

-0.392

Length

453 amino acids

Sequence
(BLAST)

001: MKETSTAGET SISVDERYTQ WKSLVPVLYD WLANHNLVWP SLSCRWGPQL EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHIAQFNEEA
101: RSPFVKKFKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR HAVLGTPESR PDLILTGHKD NAEFALAMCP TEPLVLSGGK DKSVVLWSIQ
201: DHISTLAADP GSAKSTSKAG GGNDKPVESP SIGARGIYQG HDDTVEDVQF CPLSAQEFCS VGDDSCLILW DARSGTTPAI KVEKAHNADL HCVDWNPHDI
301: NLILTGSADN TVRMFDRRKL TSGGIGSPIH TFEGHTAAVL CVQWSPDKAS IFGSSAEDGI LNLWNHEKID KKQAPNAPPG LFFRHAGHRD KVVDFHWNAS
401: DPWTIVSVSD DGESTGGGGT LQIWRMIDLI YRNEDEVLAE LDNFKAHLAT CSP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.