Factsheet for GSMUA_Achr4P08720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P24160_001	Banana	nucleus	43.24	73.33
CDY29763	Canola	endoplasmic reticulum	59.95	72.4
EES01357	Sorghum	nucleus	78.13	70.2
VIT_09s0002g02150.t01	Wine grape	nucleus	78.13	70.2
Solyc03g121580.2.1	Tomato	nucleus	78.62	69.57
Os01t0710000-01	Rice	nucleus	77.4	69.54
CDY35867	Canola	cytosol	47.67	68.31
TraesCS3B01G280400.1	Wheat	nucleus	78.87	68.15
TraesCS3A01G250900.2	Wheat	cytosol	78.62	67.94
TraesCS3D01G251300.2	Wheat	nucleus	78.62	67.94
KRH23320	Soybean	endoplasmic reticulum	75.68	67.1
PGSC0003DMT400006393	Potato	nucleus	57.0	67.05
Solyc07g039330.2.1	Tomato	nucleus	61.92	66.84
KRH12388	Soybean	nucleus	83.05	66.54
CDX81933	Canola	nucleus	78.62	66.12
KRH37388	Soybean	nucleus	83.05	65.89
CDY48711	Canola	nucleus	79.85	64.61
Bra040678.1-P	Field mustard	nucleus	78.87	64.59
AT2G19520.1	Thale cress	nucleus	80.1	64.3
CDY03358	Canola	nucleus	79.36	64.09
Bra031085.1-P	Field mustard	nucleus	78.87	63.69
CDY21661	Canola	nucleus	79.12	63.64
Bra036717.1-P	Field mustard	nucleus	74.2	62.92
HORVU3Hr1G066930.1	Barley	plastid	78.62	62.87
VIT_11s0016g02170.t01	Wine grape	nucleus	78.38	62.8
KRH10009	Soybean	cytosol, mitochondrion, nucleus	59.71	61.52
CDY06779	Canola	nucleus	72.48	60.82
Bra011133.1-P	Field mustard	nucleus	71.01	60.71
CDY43523	Canola	nucleus	70.76	60.63
AT4G29730.1	Thale cress	nucleus	71.74	59.96
GSMUA_Achr7P09120_001	Banana	nucleus	63.15	56.48
CDX82696	Canola	nucleus	60.93	56.36
GSMUA_Achr3P32330_001	Banana	cytosol	19.66	44.44
CDY70287	Canola	nucleus	19.66	43.72
GSMUA_Achr1P26410_001	Banana	nucleus	29.24	29.24
GSMUA_Achr8P33950_001	Banana	nucleus	28.99	29.21
GSMUA_Achr4P31680_001	Banana	nucleus	29.24	28.13
GSMUA_Achr5P02390_001	Banana	cytosol	27.76	26.9
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	23.59	20.51
GSMUA_Achr6P14510_001	Banana	cytosol, mitochondrion, peroxisome, plastid	15.48	19.81
GSMUA_Achr10P...	Banana	mitochondrion	15.48	19.69

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G08720_001
EnsemblPlants:GSMUA_Achr4P08720_001	EnsemblPlants:GSMUA_Achr4T08720_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SM89
PFAM:PF00400	PFAM:PF08662	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184
SMART:SM00320	SUPFAM:SSF50978	InterPro:TIF_beta_prop-like	UniParc:UPI0002969858	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

WD-40 repeat-containing protein MSI4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08720_001]

Coordinates

chr4:+:6373823..6383830

Molecular Weight (calculated)

44318.9 Da

IEP (calculated)

6.158

GRAVY (calculated)

-0.400

Length

407 amino acids

Sequence
(BLAST)

001: MCVMLGPTDG SVPNTLVIAN CEVVKPRVAA AEHISQFNEE ARSPFVKKYK TIIHPGEVNR IRELPQNSKI VATHTDSPDV LIWDVEAQPN RHPMLGAAES
101: RPDLILTGHQ QNAEFALAMC PTEPFVLSGG KDKSVVLWSI HDHISSVAES TSKSPASASN SSGKQSIKAG NEKSSDSTTV GPRGVYQGHE DTVEDVQFCP
201: SSAQEFCSVG DDSCLILWDA RVGTSPVVKV EKAHNADLHC VDWNPHDQNL ILTGSADNSV RMFDRRNLTS GGVGSPIYKF EGHKAAVLCW SPDRASVFGS
301: AAEDGFLNIW DHERVGKKKE RAGTKTPNSP PGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCGSTGGG GTLQIWRMSD LIYRPEEEVL AELEKFKAHL
401: LSCSPKS

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.