Factsheet for Os01t0710000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 18022940
nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
nucleus: 26035336

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01357	Sorghum	nucleus	92.05	92.05
TraesCS3B01G280400.1	Wheat	nucleus	92.27	88.75
TraesCS3A01G250900.2	Wheat	cytosol	92.05	88.53
TraesCS3D01G251300.2	Wheat	nucleus	92.05	88.53
HORVU3Hr1G066930.1	Barley	plastid	91.61	81.53
VIT_09s0002g02150.t01	Wine grape	nucleus	79.69	79.69
Zm00001d011705_P002	Maize	cytosol	89.4	77.88
PGSC0003DMT400006393	Potato	nucleus	59.16	77.46
GSMUA_Achr4P08720_001	Banana	cytosol	69.54	77.4
Solyc03g121580.2.1	Tomato	nucleus	78.37	77.17
Zm00001d043682_P002	Maize	cytosol, plastid	88.3	75.61
Zm00001d043683_P001	Maize	cytosol	34.0	74.76
CDY29763	Canola	endoplasmic reticulum	54.97	73.89
KRH23320	Soybean	endoplasmic reticulum	74.17	73.2
CDX81933	Canola	nucleus	76.6	71.69
KRH12388	Soybean	nucleus	78.37	69.88
Bra040678.1-P	Field mustard	nucleus	76.6	69.82
KRH37388	Soybean	nucleus	78.37	69.2
CDY48711	Canola	nucleus	76.82	69.18
Bra031085.1-P	Field mustard	nucleus	76.6	68.85
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	34.88	68.7
CDY03358	Canola	nucleus	76.38	68.65
CDY21661	Canola	nucleus	76.6	68.58
AT2G19520.1	Thale cress	nucleus	76.6	68.44
Bra036717.1-P	Field mustard	nucleus	71.96	67.92
VIT_11s0016g02170.t01	Wine grape	nucleus	75.28	67.13
CDY70287	Canola	nucleus	26.27	65.03
Solyc07g039330.2.1	Tomato	nucleus	54.08	64.99
AT4G29730.1	Thale cress	nucleus	69.54	64.68
CDY43523	Canola	nucleus	67.77	64.63
CDY06779	Canola	nucleus	69.09	64.54
Bra011133.1-P	Field mustard	nucleus	67.77	64.5
GSMUA_Achr3P32330_001	Banana	cytosol	25.61	64.44
CDY35867	Canola	cytosol	39.51	63.03
CDX82696	Canola	nucleus	60.49	62.27
KRH10009	Soybean	cytosol, mitochondrion, nucleus	52.32	60.0
GSMUA_Achr7P24160_001	Banana	nucleus	31.13	58.75
GSMUA_Achr7P09120_001	Banana	nucleus	58.28	58.02
Zm00001d050047_P001	Maize	nucleus	27.37	44.93
Os03t0640100-01	Rice	cytosol	30.91	32.71
Os09t0540600-01	Rice	cytosol	26.27	29.02
Os12t0132400-01	Rice	nucleus	7.95	23.53
Os11t0134500-01	Rice	nucleus	23.62	23.01
Os02t0245100-01	Rice	cytosol, golgi, plastid	16.11	22.67
Os12t0132300-02	Rice	cytosol	0.44	1.09
Os11t0134400-00	Rice	cytosol	0.44	1.09

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:4327826	EMBL:AK111794	ProteinID:BAD81520.1	ProteinID:BAF05950.1
ProteinID:BAS73972.1	EMBL:DQ132808	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os01g0710000	EnsemblPlants:Os01t0710000-01	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	UniProt:Q5NAI9	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000049E7BE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015621921.1
SEG:seg	:	:	:	:	:

Description

OsWD40-23Similar to WD-repeat protein RBAP1. (Os01t0710000-01)

Coordinates

chr1:+:29501122..29506948

Molecular Weight (calculated)

50113.5 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.495

Length

453 amino acids

Sequence
(BLAST)

001: MKEKGSRAAV DERYAQWKSL IPVLYDWFAN HNLVWPSLSC RWGPQFEKAT YKNRQRLYLS EQTDGTVPNT LVIANCEVVK PRVAAAEHIS QFNEEARSPF
101: VKKYKTIIHP GEVNRIRELP QNSKIIATHT DSPDVLIWDV EAQPNRQAQL AQMESRPDLI LRGHKDIAEF ALAMCPAEPY VLSGGKDKSV VWWSIQDHIS
201: ALGDSSKTES SPGASGSKGK TANDKDSPKV DPRGIFLGHD STVEDVQFCP SSAQEFCSVG DDSCLILWDA RSGTGPAVKV EKAHGGDVHC VDWNLHDVNY
301: ILTGSADNSV RMWDRRNLGS GGAGIPVHKF EGHKAAVLCV QWSPDKASVF GSSAEDGFLN VWDHEKVGNK KNPNAPAGLF FQHAGHRDKI VDFHWNSSDP
401: WTIVSVSDDG ESTGGGGTLQ IWRMSDLIYR PEDEVLAELE NFKTHLASCA PRS

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.