Factsheet for Zm00001d043682_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01357	Sorghum	nucleus	80.15	93.6
Zm00001d052871_P001	Maize	cytosol	5.29	93.33
Os01t0710000-01	Rice	nucleus	75.61	88.3
TraesCS3B01G280400.1	Wheat	nucleus	76.75	86.2
TraesCS3D01G251300.2	Wheat	nucleus	76.56	85.99
TraesCS3A01G250900.2	Wheat	cytosol	76.56	85.99
Zm00001d043683_P001	Maize	cytosol	31.76	81.55
HORVU3Hr1G066930.1	Barley	plastid	78.26	81.34
Zm00001d011705_P002	Maize	cytosol	79.58	80.96
PGSC0003DMT400006393	Potato	nucleus	51.23	78.32
VIT_09s0002g02150.t01	Wine grape	nucleus	65.41	76.38
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	32.33	74.35
Solyc03g121580.2.1	Tomato	nucleus	64.08	73.7
CDY29763	Canola	endoplasmic reticulum	46.12	72.4
KRH23320	Soybean	endoplasmic reticulum	62.0	71.46
CDX81933	Canola	nucleus	65.03	71.07
Bra040678.1-P	Field mustard	nucleus	65.41	69.62
CDY48711	Canola	nucleus	65.78	69.18
KRH12388	Soybean	nucleus	65.97	68.7
CDY03358	Canola	nucleus	65.41	68.65
Bra031085.1-P	Field mustard	nucleus	65.22	68.45
AT2G19520.1	Thale cress	nucleus	65.6	68.44
CDY21661	Canola	nucleus	65.22	68.18
KRH37388	Soybean	nucleus	65.97	68.03
Bra036717.1-P	Field mustard	nucleus	61.63	67.92
CDY70287	Canola	nucleus	23.06	66.67
VIT_11s0016g02170.t01	Wine grape	nucleus	62.38	64.96
CDX82696	Canola	nucleus	53.5	64.32
CDY06779	Canola	nucleus	58.6	63.92
CDY43523	Canola	nucleus	57.28	63.79
Bra011133.1-P	Field mustard	nucleus	57.09	63.45
AT4G29730.1	Thale cress	nucleus	57.84	62.83
Solyc07g039330.2.1	Tomato	nucleus	44.61	62.6
CDY35867	Canola	cytosol	32.14	59.86
KRH10009	Soybean	cytosol, mitochondrion, nucleus	43.67	58.48
Zm00001d050047_P001	Maize	nucleus	25.14	48.19
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	25.14	30.86
Zm00001d033247_P001	Maize	nucleus	24.76	30.39
Zm00001d013702_P001	Maize	nucleus	24.57	30.16
Zm00001d022614_P001	Maize	cytosol	22.31	29.28
Zm00001d033252_P001	Maize	cytosol, nucleus, plastid	5.67	25.64
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	19.28	21.34
Zm00001d010850_P003	Maize	plasma membrane	19.28	21.21
Zm00001d016170_P001	Maize	cytosol	12.48	20.69

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:542087	UniProt:A0A1D6NE84	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM38798.1	PFAM:PF00400	PFAM:PF12265
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000842734B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d043682
EnsemblPlants:Zm00001d043682_P002	EnsemblPlants:Zm00001d043682_T002	SEG:seg	:	:	:

Description

WD-repeat protein RBAP2 WD-repeat protein RBAP2

Coordinates

chr3:-:207218328..207225148

Molecular Weight (calculated)

58490.7 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.347

Length

529 amino acids

Sequence
(BLAST)

001: MLSSPCSQSG HRDCLRRPEQ AASVQVRSSR RRRPSVSEMK ERGGSRAAVD ERYAQWKSLI PVLYDWFANH NLVWPSLSCR WGPQFEKATY KNRQRLYLSE
101: QASASASIYY FISTDGSVPN TLVIANCEVV KPRVAAAEHI SQFNEEARSP FVKKYKTIVH PGEVNRIREL PQNSKIIATH TDSPDVLVWD VEAQPNRHAV
201: LGASESRPDL ILTGHQENAE FALAMCPAEP YVLSGGKDKF VVLWSIQDHI SALGDSSSSP GASGSKQSGK IANEKESPKV DPRGIFHGHD STVEDVQFCP
301: SSAQEFCSVG DDACLILWDA RTGTDPAVKV EKAHSGDVHC VDWNPLDVNY ILTGSADNSV RMWDRRNLGS GGAGSPIHKF EGHKAAVLCV QACQDNILLF
401: CTLYADMVAS YDVFGYLFAI ILVSDCSGHL TEHLFLEVLQ KMVGKKKNSN VPAGLFFQHA GHRDKIVDFH WNSSDPWTIV SVSDDGESTG GGGTLQIWRM
501: SDLIYRPEDE VLTELENFKA HLASCAPRN

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.