Factsheet for VIT_11s0016g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08720_001	Banana	cytosol	62.8	78.38
CDY29763	Canola	endoplasmic reticulum	51.77	78.04
VIT_09s0002g02150.t01	Wine grape	nucleus	68.31	76.6
Os01t0710000-01	Rice	nucleus	67.13	75.28
EES01357	Sorghum	nucleus	66.93	75.06
CDX81933	Canola	nucleus	71.26	74.79
KRH12388	Soybean	nucleus	74.41	74.41
Bra040678.1-P	Field mustard	nucleus	72.44	74.04
KRH37388	Soybean	nucleus	74.61	73.88
Bra031085.1-P	Field mustard	nucleus	73.03	73.61
CDY21661	Canola	nucleus	73.23	73.52
TraesCS3B01G280400.1	Wheat	nucleus	68.11	73.46
TraesCS3D01G251300.2	Wheat	nucleus	67.91	73.25
TraesCS3A01G250900.2	Wheat	cytosol	67.91	73.25
CDY48711	Canola	nucleus	72.44	73.16
AT2G19520.1	Thale cress	nucleus	72.83	72.98
Bra036717.1-P	Field mustard	nucleus	68.9	72.92
CDY03358	Canola	nucleus	72.05	72.62
Solyc07g039330.2.1	Tomato	nucleus	53.74	72.41
CDY35867	Canola	cytosol	39.17	70.07
HORVU3Hr1G066930.1	Barley	plastid	68.9	68.76
CDY43523	Canola	nucleus	63.19	67.58
Bra011133.1-P	Field mustard	nucleus	63.19	67.44
CDY06779	Canola	nucleus	64.37	67.42
AT4G29730.1	Thale cress	nucleus	64.57	67.35
CDX82696	Canola	nucleus	58.27	67.27
CDY70287	Canola	nucleus	23.82	66.12
Zm00001d043683_P001	Maize	cytosol	26.38	65.05
Zm00001d011705_P002	Maize	cytosol	65.55	64.04
GSMUA_Achr7P24160_001	Banana	nucleus	30.12	63.75
Zm00001d052871_P001	Maize	cytosol	3.74	63.33
Zm00001d043682_P002	Maize	cytosol, plastid	64.96	62.38
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	27.76	61.3
GSMUA_Achr7P09120_001	Banana	nucleus	53.94	60.22
GSMUA_Achr3P32330_001	Banana	cytosol	20.67	58.33
Zm00001d050047_P001	Maize	nucleus	21.85	40.22
VIT_03s0038g02430.t01	Wine grape	cytosol	26.18	33.17
VIT_16s0013g01550.t01	Wine grape	nucleus	26.97	32.31
VIT_11s0016g02270.t01	Wine grape	nucleus	20.47	21.94
VIT_10s0003g01320.t01	Wine grape	cytosol	12.99	16.92

Protein Annotations

EntrezGene:100264505	wikigene:100264505	MapMan:12.2.1.3	ProteinID:CCB51443	ProteinID:CCB51443.1	UniProt:F6HGW0
EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR017986	EntrezGene:LOC100264505
wikigene:LOC100264505	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC68787	UniParc:UPI00021081F2	ArrayExpress:VIT_11s0016g02170
EnsemblPlantsGene:VIT_11s0016g02170	EnsemblPlants:VIT_11s0016g02170.t01	unigene:Vvi.11388	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002282044	RefSeq:XP_002282044.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:1774972..1783050

Molecular Weight (calculated)

55791.2 Da

IEP (calculated)

6.466

GRAVY (calculated)

-0.525

Length

508 amino acids

Sequence
(BLAST)

001: MESQTVKKKR GRKPKVRDYY EGAAGGKRGG GAGEGDGGGM RERAKSGQQQ PVDDSYSRWK NVVPVIYDWL ANHNLVWPSL SCRWGPQFEH GNHKNRQRLY
101: LSEQTDGTVP NTLVIANCEI VKPRVAAAEY ISAFNEEARS PFVKKHKTIL HPGEVNRIRE LPQSNRIVAT HTDCPEVFIW DIEAQPNRHA VLGAAVSRPD
201: LILTGHQDNA EFALAMCPAE PFVLSGGKDK SVVLWSIQDH ISTLATDSET TKPPGSGGSI IKSNSNPSEG NDKPADSPSI GPRGIFHGHE DTVEDVQFCP
301: SSAQEFCSVG DDSCLILWDA RVGFSPVVKV EKAHNADLHC VDWNPHDQNL ILTGSADNSV CMFDRRNLTS GGVGSPIHKF EDHKAAVLCV QWCPDKSSVF
401: GSSAEDGLLN IWDHQLVGKK KEGGPRTPTS ASGLFFKHAG HRDKVVDFHW NASDPWTVVS VSDDCDVSGG GGTLQIWRMS DMIYRDEDAV LAELRNFKSH
501: VAECPSWQ

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.