CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70287	Canola	nucleus	40.0	96.17
CDY29763	Canola	endoplasmic reticulum	68.64	89.61
Bra040678.1-P	Field mustard	nucleus	89.09	78.87
CDY03358	Canola	nucleus	86.59	75.6
CDY48711	Canola	nucleus	86.14	75.35
CDY21661	Canola	nucleus	85.91	74.7
CDX81933	Canola	nucleus	81.59	74.17
AT2G19520.1	Thale cress	nucleus	84.32	73.18
Zm00001d043683_P001	Maize	cytosol	32.5	69.42
GSMUA_Achr3P32330_001	Banana	cytosol	26.82	65.56
CDY35867	Canola	cytosol	41.14	63.73
KRH12388	Soybean	nucleus	72.5	62.8
KRH37388	Soybean	nucleus	72.73	62.38
EES01357	Sorghum	nucleus	63.64	61.81
CDY06779	Canola	nucleus	67.5	61.24
GSMUA_Achr4P08720_001	Banana	cytosol	56.36	60.93
Os01t0710000-01	Rice	nucleus	62.27	60.49
CDY43523	Canola	nucleus	64.77	60.0
TraesCS3A01G250900.2	Wheat	cytosol	63.86	59.66
TraesCS3B01G280400.1	Wheat	nucleus	63.86	59.66
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	31.14	59.57
TraesCS3D01G251300.2	Wheat	nucleus	63.64	59.45
VIT_11s0016g02170.t01	Wine grape	nucleus	67.27	58.27
HORVU3Hr1G066930.1	Barley	plastid	65.45	56.58
Zm00001d043682_P002	Maize	cytosol, plastid	64.32	53.5
Zm00001d011705_P002	Maize	cytosol	61.59	52.12
Solyc07g039330.2.1	Tomato	nucleus	43.64	50.93
GSMUA_Achr7P24160_001	Banana	nucleus	27.27	50.0
GSMUA_Achr7P09120_001	Banana	nucleus	46.82	45.27
Zm00001d050047_P001	Maize	nucleus	24.77	39.49
CDY70131	Canola	cytosol	12.95	27.27
CDY62688	Canola	nucleus	25.0	25.82
CDY43875	Canola	nucleus	24.77	25.59
CDY02805	Canola	nucleus	23.18	24.34
CDY32715	Canola	nucleus	22.95	24.28
CDY47479	Canola	cytosol	22.27	23.67
CDY26787	Canola	cytosol	22.27	23.67
CDY03357	Canola	plastid	20.68	19.24
CDY48712	Canola	plastid	20.45	19.11
CDY21659	Canola	nucleus	20.45	19.03
CDX81935	Canola	nucleus	20.45	18.95
CDX88663	Canola	nucleus	24.55	16.98
CDY58569	Canola	cytosol	24.55	16.98
CDX90175	Canola	cytosol	12.05	16.72
CDY43325	Canola	cytosol	12.05	16.72
CDX99799	Canola	cytosol	11.82	16.4
CDY50786	Canola	cytosol	11.82	16.4
CDX82701	Canola	nucleus	14.32	16.24
CDY35872	Canola	cytosol, nucleus, plastid	11.82	15.29
Zm00001d052871_P001	Maize	cytosol	0.45	6.67

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:A0A078CZY6	EnsemblPlants:CDX82696	ProteinID:CDX82696	ProteinID:CDX82696.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00137956001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI0004EE1F7F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaC07g01700D

Coordinates

chrLK031829:+:1314331..1317177

Molecular Weight (calculated)

48376.2 Da

IEP (calculated)

6.827

GRAVY (calculated)

-0.339

Length

440 amino acids

Sequence
(BLAST)

001: MESDEAAAAA AAASPQGSGG TVTPAPKKRG RKPKIKEDSQ TPSSSSQQSG GKKTKQSVDE KYTQWKGLVP ILYDWLANHN LVWPSLSCRW GPQLDQATYK
101: NRQRLYLSEQ TDGSVPNTLV IANCEVVKPR VAAAEHISQF NEEARSPFVK KYKTIIHPGE VNRIRELPQN SKIIATHTDS PDVLIWDVET QPNRHAVLGA
201: ATSRPDLILT GHQDNAEFAL AMCPTEPFVL SGGKDKSVVL WSIQDHITTV GTDSKSSGSI IKQTGEGGDK TESPSVGPRG VYHGHNDTVE DVAFSPTSAQ
301: EFCSVGDDSC LILWDARTGT SPVTKVEKAH DADLHCVDWN PHDDNLILTG SADNTVRLYD RRNLTSNGVG TPIYKFEGHR AAVLCVQWCP DKSSVFFLLC
401: LCFDLKLVSI LLDFRIRKQL LIQVQSILIS ILVFLPFLYN

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.