CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0710000-01	Rice	nucleus	92.05	92.05
TraesCS3B01G280400.1	Wheat	nucleus	92.27	88.75
TraesCS3A01G250900.2	Wheat	cytosol	92.05	88.53
TraesCS3D01G251300.2	Wheat	nucleus	92.05	88.53
HORVU3Hr1G066930.1	Barley	plastid	92.49	82.32
Zm00001d011705_P002	Maize	cytosol	94.48	82.31
Zm00001d043682_P002	Maize	cytosol, plastid	93.6	80.15
Zm00001d043683_P001	Maize	cytosol	36.42	80.1
VIT_09s0002g02150.t01	Wine grape	nucleus	79.91	79.91
PGSC0003DMT400006393	Potato	nucleus	59.82	78.32
GSMUA_Achr4P08720_001	Banana	cytosol	70.2	78.13
Solyc03g121580.2.1	Tomato	nucleus	77.92	76.74
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	38.63	76.09
CDY29763	Canola	endoplasmic reticulum	56.51	75.96
KRH23320	Soybean	endoplasmic reticulum	74.83	73.86
CDX81933	Canola	nucleus	78.15	73.14
Bra040678.1-P	Field mustard	nucleus	77.7	70.83
CDY48711	Canola	nucleus	78.15	70.38
KRH12388	Soybean	nucleus	78.81	70.28
AT2G19520.1	Thale cress	nucleus	78.59	70.22
CDY03358	Canola	nucleus	77.92	70.04
Bra031085.1-P	Field mustard	nucleus	77.7	69.84
KRH37388	Soybean	nucleus	78.81	69.59
CDY21661	Canola	nucleus	77.7	69.57
Bra036717.1-P	Field mustard	nucleus	73.29	69.17
GSMUA_Achr3P32330_001	Banana	cytosol	26.71	67.22
VIT_11s0016g02170.t01	Wine grape	nucleus	75.06	66.93
CDY70287	Canola	nucleus	26.71	66.12
CDY43523	Canola	nucleus	69.09	65.89
Bra011133.1-P	Field mustard	nucleus	68.87	65.55
Solyc07g039330.2.1	Tomato	nucleus	54.53	65.52
CDY06779	Canola	nucleus	69.98	65.36
AT4G29730.1	Thale cress	nucleus	69.76	64.89
CDX82696	Canola	nucleus	61.81	63.64
CDY35867	Canola	cytosol	39.74	63.38
KRH10009	Soybean	cytosol, mitochondrion, nucleus	53.42	61.27
GSMUA_Achr7P24160_001	Banana	nucleus	32.23	60.83
GSMUA_Achr7P09120_001	Banana	nucleus	57.4	57.14
Zm00001d050047_P001	Maize	nucleus	29.36	48.19
EER97107	Sorghum	cytosol	27.37	30.77
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.06	22.76
EES04830	Sorghum	cytosol, peroxisome, plastid	16.11	22.74
OQU91278	Sorghum	cytosol, nucleus, plastid	30.46	22.7
OQU82815	Sorghum	mitochondrion	22.96	22.66

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:8069776	UniProt:C5XI77	EnsemblPlants:EES01357	ProteinID:EES01357
ProteinID:EES01357.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G274400	SUPFAM:SSF50978	unigene:Sbi.15391
UniParc:UPI0001A847C8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002456237.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:61047029..61052739

Molecular Weight (calculated)

49915.2 Da

IEP (calculated)

6.326

GRAVY (calculated)

-0.472

Length

453 amino acids

Sequence
(BLAST)

001: MKERSGSRAA VDERYAQWKS LIPVLYDWFA NHNLVWPSLS CRWGPQFEKA TYKNRQRLYL SEQTDGSVPN TLVIANCEVV KPRVAAAEHI SQFNEEARSP
101: FVKKYKTIVH PGEVNRIREL PQNSKIIATH TDSPDVLIWD VEAQPNRHAV LGASESRPDL ILTGHKENAE FALAMCPAEP YVLSGGKDKS VVLWSIQDHI
201: SALGDSSSSP GASGSKQSGK SATEKESPKV DPRGIFHGHD STVEDVQFCP SSAQEFCSVG DDACLILWDA RTGTGPAVKV EKAHSGDVHC VDWNPLDVNY
301: ILTGSADNSV RMWDRRKLGS GGASSPIHKF EGHKAAVLCV QWSPDRASVF GSSAEDGFLN VWDHEKVGTK KNTNVPAGLF FQHAGHRDKI VDFHWNSSDP
401: WTIVSVSDDG ESTGGGGTLQ IWRMSDLIYR PEDEVLTELE NFKAHLASCA PRT

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.