CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48711	Canola	nucleus	98.61	98.81
Bra036717.1-P	Field mustard	nucleus	94.05	98.75
CDX81933	Canola	nucleus	90.87	94.63
CDY21661	Canola	nucleus	93.85	93.48
AT2G19520.1	Thale cress	nucleus	92.26	91.72
CDY70287	Canola	nucleus	33.13	91.26
CDY29763	Canola	endoplasmic reticulum	60.91	91.1
CDX82696	Canola	nucleus	75.6	86.59
CDY35867	Canola	cytosol	48.61	86.27
GSMUA_Achr4P08720_001	Banana	cytosol	64.09	79.36
KRH12388	Soybean	nucleus	79.17	78.54
KRH37388	Soybean	nucleus	79.37	77.97
EES01357	Sorghum	nucleus	70.04	77.92
Os01t0710000-01	Rice	nucleus	68.65	76.38
CDY06779	Canola	nucleus	73.02	75.88
CDY43523	Canola	nucleus	70.83	75.16
TraesCS3A01G250900.2	Wheat	cytosol	69.84	74.73
TraesCS3B01G280400.1	Wheat	nucleus	69.84	74.73
TraesCS3D01G251300.2	Wheat	nucleus	69.64	74.52
VIT_11s0016g02170.t01	Wine grape	nucleus	72.62	72.05
HORVU3Hr1G066930.1	Barley	plastid	71.23	70.53
Zm00001d052871_P001	Maize	cytosol	4.17	70.0
Zm00001d043683_P001	Maize	cytosol	28.57	69.9
Solyc07g039330.2.1	Tomato	nucleus	50.99	68.17
GSMUA_Achr3P32330_001	Banana	cytosol	24.21	67.78
Zm00001d011705_P002	Maize	cytosol	68.25	66.15
Zm00001d043682_P002	Maize	cytosol, plastid	68.65	65.41
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	27.18	59.57
GSMUA_Achr7P09120_001	Banana	nucleus	53.57	59.34
GSMUA_Achr7P24160_001	Banana	nucleus	27.98	58.75
Zm00001d050047_P001	Maize	nucleus	21.83	39.86
CDY62688	Canola	nucleus	27.78	32.86
CDY43875	Canola	nucleus	27.58	32.63
CDY47479	Canola	cytosol	26.79	32.61
CDY26787	Canola	cytosol	26.59	32.37
CDY02805	Canola	nucleus	26.39	31.74
CDY32715	Canola	nucleus	25.79	31.25
CDY70131	Canola	cytosol	11.9	28.71
CDY03357	Canola	plastid	22.02	23.47
CDY48712	Canola	plastid	21.83	23.35
CDY21659	Canola	nucleus	21.83	23.26
CDX81935	Canola	nucleus	21.83	23.16
CDX88663	Canola	nucleus	27.78	22.01
CDY58569	Canola	cytosol	27.78	22.01
CDY43325	Canola	cytosol	13.69	21.77
CDX90175	Canola	cytosol	13.69	21.77
CDY50786	Canola	cytosol	13.49	21.45
CDX99799	Canola	cytosol	13.49	21.45
CDX82701	Canola	nucleus	16.47	21.39
CDY35872	Canola	cytosol, nucleus, plastid	14.09	20.88

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDY03358	ProteinID:CDY03358	ProteinID:CDY03358.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00115982001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF0EA3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC09g09900D

Coordinates

chrLK031942:-:1025844..1029080

Molecular Weight (calculated)

55343.5 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.563

Length

504 amino acids

Sequence
(BLAST)

001: MESDEAAAAA AASPQASGGT VTPAPKKRGR KPKSKDESQE QISGGKMKES GKKTKQEEQS VDEKYSQWKG LVPILYDWLA NHNLVWPSLS CRWGPQLDQA
101: TYKNRQRLYL SEQTDGSVPN TLVIANCEVV KPRVAAAEHI SQFNEEARSP FVKKYKTIIH PGEVNRIREL PQNSKIVATH TDSPDVLIWD VDTQPNRHAV
201: LGAASSRPDL ILTGHQDNAE FALAMCPTEP FVLSGGKDKM VVLWSIQDHI TTVGTDSKSS GSIIKQTGEG GDKTESPSVG PRGVYQGHDD TVEDVAFSPT
301: SAQEFCSVGD DSCLILWDAR TGTSPVTKVE KAHDADLHCV DWNPHDDNLI LTGSADNTVR LYDRRSLTSN GVGTPIYKFE GHKAAVLCVQ WSPDKASVFG
401: SSAEDGLLNI WDYDRVSKKS DRAAKNPAGL FFQHAGHRDK VVDFHWNAAD PWTIVSVSDD CETTGGGGTL QIWRMSDLIY RPEEEVLTEL EKFKSHVMTC
501: ASKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.