Factsheet for GSMUA_Achr7P09120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08720_001	Banana	cytosol	56.48	63.15
CDY29763	Canola	endoplasmic reticulum	44.62	60.24
Os01t0710000-01	Rice	nucleus	58.02	58.28
VIT_09s0002g02150.t01	Wine grape	nucleus	57.58	57.84
Solyc03g121580.2.1	Tomato	nucleus	58.24	57.61
EES01357	Sorghum	nucleus	57.14	57.4
PGSC0003DMT400006393	Potato	nucleus	43.08	56.65
TraesCS3B01G280400.1	Wheat	nucleus	58.24	56.26
KRH23320	Soybean	endoplasmic reticulum	56.7	56.21
TraesCS3A01G250900.2	Wheat	cytosol	58.02	56.05
TraesCS3D01G251300.2	Wheat	nucleus	58.02	56.05
CDX81933	Canola	nucleus	58.9	55.37
Solyc07g039330.2.1	Tomato	nucleus	45.71	55.17
KRH12388	Soybean	nucleus	61.32	54.92
KRH37388	Soybean	nucleus	61.32	54.39
Bra040678.1-P	Field mustard	nucleus	59.12	54.12
Bra031085.1-P	Field mustard	nucleus	59.78	53.97
VIT_11s0016g02170.t01	Wine grape	nucleus	60.22	53.94
AT2G19520.1	Thale cress	nucleus	60.0	53.85
CDY21661	Canola	nucleus	59.78	53.75
CDY48711	Canola	nucleus	59.34	53.68
CDY03358	Canola	nucleus	59.34	53.57
Zm00001d052871_P001	Maize	cytosol	3.52	53.33
CDY43523	Canola	nucleus	55.16	52.84
CDY06779	Canola	nucleus	56.26	52.78
Bra011133.1-P	Field mustard	nucleus	55.16	52.73
HORVU3Hr1G066930.1	Barley	plastid	58.9	52.65
KRH10009	Soybean	cytosol, mitochondrion, nucleus	45.49	52.41
CDY35867	Canola	cytosol	32.53	52.11
Bra036717.1-P	Field mustard	nucleus	54.95	52.08
AT4G29730.1	Thale cress	nucleus	54.73	51.13
GSMUA_Achr7P24160_001	Banana	nucleus	24.84	47.08
CDX82696	Canola	nucleus	45.27	46.82
GSMUA_Achr3P32330_001	Banana	cytosol	18.02	45.56
CDY70287	Canola	nucleus	17.8	44.26
GSMUA_Achr1P26410_001	Banana	nucleus	27.91	31.2
GSMUA_Achr8P33950_001	Banana	nucleus	27.47	30.94
GSMUA_Achr4P31680_001	Banana	nucleus	27.47	29.55
GSMUA_Achr5P02390_001	Banana	cytosol	25.49	27.62
GSMUA_Achr10P...	Banana	mitochondrion	13.85	19.69
GSMUA_Achr6P14510_001	Banana	cytosol, mitochondrion, peroxisome, plastid	13.63	19.5
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	19.78	19.23

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G09120_001
EnsemblPlants:GSMUA_Achr7P09120_001	EnsemblPlants:GSMUA_Achr7T09120_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TG00
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00029678FE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

WD-40 repeat-containing protein MSI4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G09120_001]

Coordinates

chr7:-:7467160..7485794

Molecular Weight (calculated)

50821.4 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.353

Length

455 amino acids

Sequence
(BLAST)

001: MLHQALNMDS NHSRRCRDMY CLSSNVKFIL LCLSRNLACK WGQQLEEKAY KNIQRLYLSE RATLVTDGTY PNTLVVANCE VVKPRTAAAE HISVFDEESQ
101: SPYVKKIKTI IHPGEVNRIR ELPQNSNIVA THTDSPEVLI WDVDAQPDCG DDLGAADSHP NLILTGHQSN AEYALAMCNY EALVLSGGSS PTEVDPFIKT
201: ANKVYKISDS PTVAPRSIFH GHTDTVEDVQ FCHFSPQEFC SVGDDSCLIL WDARAGRSPA LKVEKAHDGD INCVDWSPHD ENFLLTGSAD SSVKIFDRRN
301: LTSGGAGSSL HTFQHHKAAV LCVQALIFSF FWSPDKSSVF GSAGEDNLVN IWDYAKVGAS YEHFMRTPTA PPGLFFQHAG HRDKVVDFHW NATEPWTIAS
401: VSDDCARVNG GGTLQVWRMS DLIHRHEDEV LAELEMRYRH EDEELNEQLV SSFHS

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.