Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001997.1-P | Field mustard | nucleus | 92.34 | 46.17 |
| CDY26787 | Canola | cytosol | 89.0 | 44.93 |
| CDY47479 | Canola | cytosol | 88.04 | 44.44 |
| AT2G16780.1 | Thale cress | cytosol | 82.3 | 41.45 |
| Solyc01g111590.2.1 | Tomato | cytosol | 63.16 | 32.75 |
| PGSC0003DMT400015787 | Potato | cytosol | 62.2 | 32.26 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 61.72 | 32.17 |
| KRH29002 | Soybean | nucleus | 61.72 | 32.01 |
| KRH24317 | Soybean | nucleus | 61.24 | 31.92 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 52.63 | 27.03 |
| HORVU2Hr1G092350.1 | Barley | cytosol | 17.7 | 26.62 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 51.2 | 26.49 |
| CDY43875 | Canola | nucleus | 48.8 | 23.94 |
| EER97107 | Sorghum | cytosol | 45.93 | 23.82 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 45.93 | 23.76 |
| TraesCS5A01G331900.1 | Wheat | cytosol | 45.93 | 23.7 |
| Os09t0540600-01 | Rice | cytosol | 46.41 | 23.66 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 45.93 | 23.53 |
| CDY62688 | Canola | nucleus | 47.37 | 23.24 |
| CDY02805 | Canola | nucleus | 46.41 | 23.15 |
| Zm00001d022614_P001 | Maize | cytosol | 44.5 | 23.08 |
| CDY32715 | Canola | nucleus | 44.98 | 22.6 |
| HORVU5Hr1G084160.2 | Barley | cytosol | 39.71 | 19.81 |
| CDY29763 | Canola | endoplasmic reticulum | 27.27 | 16.91 |
| CDY58569 | Canola | cytosol | 50.24 | 16.51 |
| CDX88663 | Canola | nucleus | 50.24 | 16.51 |
| CDX82696 | Canola | nucleus | 27.27 | 12.95 |
| CDY35867 | Canola | cytosol | 16.75 | 12.32 |
| CDY43523 | Canola | nucleus | 27.75 | 12.21 |
| CDX81933 | Canola | nucleus | 28.23 | 12.19 |
| CDY48711 | Canola | nucleus | 28.71 | 11.93 |
| CDY03358 | Canola | nucleus | 28.71 | 11.9 |
| CDY21661 | Canola | nucleus | 28.71 | 11.86 |
| CDY06779 | Canola | nucleus | 27.27 | 11.75 |
| CDX81935 | Canola | nucleus | 24.4 | 10.74 |
| CDY48712 | Canola | plastid | 23.92 | 10.62 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 17.22 | 10.59 |
| CDY03357 | Canola | plastid | 23.92 | 10.57 |
| CDX90175 | Canola | cytosol | 15.79 | 10.41 |
| CDX99799 | Canola | cytosol | 15.79 | 10.41 |
| CDY43325 | Canola | cytosol | 15.79 | 10.41 |
| CDY70287 | Canola | nucleus | 9.09 | 10.38 |
| CDY21659 | Canola | nucleus | 23.45 | 10.36 |
| CDY50786 | Canola | cytosol | 15.31 | 10.09 |
| CDX82701 | Canola | nucleus | 18.18 | 9.79 |
Protein Annotations
| MapMan:12.2.1.3 | Gene3D:2.130.10.10 | UniProt:A0A078JX96 | EnsemblPlants:CDY70131 | ProteinID:CDY70131 | ProteinID:CDY70131.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00096575001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF137 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE3E91 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
BnaCnng66880DBnaCnng66880D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JX96]
Coordinates
chrLK041255:+:1922..3467
Molecular Weight (calculated)
23322.7 Da
IEP (calculated)
6.085
GRAVY (calculated)
-0.478
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADAVIPTP DTEPGLGGTN QDPIVPKVEI RQKIRVDGEV NRARCMPQRT TLVGAKTSGC EVFLFDYTKH ASKPQTSDCD PDLRLLGHDK EGYGLSWSPF
101: KEGYLLSGSQ DQKICLWDVS ATPQDKKLNA MFVYEGHECA VEDVSWHMKN ENLFGSAGDD GRLVIWDTRT NKMQHHVKVH EKEVETISKA KLACPVFMVT
201: GTHISDTYV
101: KEGYLLSGSQ DQKICLWDVS ATPQDKKLNA MFVYEGHECA VEDVSWHMKN ENLFGSAGDD GRLVIWDTRT NKMQHHVKVH EKEVETISKA KLACPVFMVT
201: GTHISDTYV
001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
Arabidopsis Description
MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.