Factsheet for PGSC0003DMT400034220

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g039200.2.1	Tomato	nucleus	93.39	94.81
VIT_11s0016g02270.t01	Wine grape	nucleus	80.6	79.75
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	50.96	78.36
KRH58776	Soybean	nucleus	75.48	74.84
Os12t0132400-01	Rice	nucleus	24.31	74.51
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	72.71	72.86
KRH42676	Soybean	nucleus	75.69	71.86
CDY48712	Canola	plastid	70.15	69.85
CDY03357	Canola	plastid	70.15	69.56
CDY21659	Canola	nucleus	69.72	69.13
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	68.87	68.87
CDX81935	Canola	nucleus	69.72	68.84
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	39.45	68.27
Bra040681.1-P	Field mustard	cytosol	51.81	67.13
Os11t0134500-01	Rice	nucleus	65.67	66.24
TraesCS4B01G131200.1	Wheat	nucleus	67.8	65.98
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.8	65.98
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.59	65.77
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	66.74	65.34
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	66.74	64.94
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	65.88	64.64
Zm00001d010850_P003	Maize	plasma membrane	66.1	64.45
CDY35872	Canola	cytosol, nucleus, plastid	46.27	63.82
CDX82701	Canola	nucleus	52.45	63.4
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.03	63.15
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	64.39	62.53
OQU82815	Sorghum	mitochondrion	59.7	61.0
PGSC0003DMT400015787	Potato	cytosol	21.54	25.06
PGSC0003DMT400061016	Potato	cytosol	22.39	24.76
PGSC0003DMT400006393	Potato	nucleus	16.63	22.54
PGSC0003DMT400023242	Potato	cytosol	13.86	20.57
PGSC0003DMT400022498	Potato	cytosol	13.65	20.25
Os12t0132300-02	Rice	cytosol	0.85	2.19
Os11t0134400-00	Rice	cytosol	0.85	2.19

Protein Annotations

EntrezGene:102594540	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:ABB72800	ProteinID:ABB72800.1	EMBL:DQ268841
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1B0C0
PFAM:PF00400	PFAM:PF12265	EnsemblPlantsGene:PGSC0003DMG400013154	PGSC:PGSC0003DMG400013154	EnsemblPlants:PGSC0003DMT400034220	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296B6C7
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006346562.1	SEG:seg

Description

WD-40 repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013154]

Coordinates

chr7:-:34520614..34524008

Molecular Weight (calculated)

51508.9 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.455

Length

469 amino acids

Sequence
(BLAST)

001: MVRSLKNPKK AKRKNKAKKG EGSSDSVPSL PAKVWQPGVD KLEEGEELQC DASAYNSLHA FHIGWPCLSF DVLRDSLGLV RTEFPHSVYC VAGTQAEKSS
101: WNSIGIFKLS NISGKRRDLV PDKTGDENSD MDSNSSDSDE EEEAGSGTPV LQLHKVFHEG CVNRIRAMTQ NPHIVASWGD TGHVQVWDIS SHINALAESE
201: SDLSHGASAV SNQAPLFKFG GHKDEGYAID WSPRVPGKLV SGDCRNCIHL WEPTSGATWN VSAKSYIGHT ASVEDLQWSP TEDTVFASCS VDRNIIIWDT
301: RMDNPLAATI TAHKADVNVI SWNKLASCML ASGSDDGTFS IQDLRMVKDG DSVVAHFDYH KHPITSIEWS PHEASTLAVS SSDNQLTIWD LSLERDEEEE
401: AEFKTKMKEQ VNAPTDLPPQ LLFVHQGQKD LKELHWHSQI PGMVVSTAAD GFNILMPSNI ENAIPANVA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.