Factsheet for HORVU4Hr1G026330.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G131200.1	Wheat	nucleus	95.44	95.44
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	95.23	95.23
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	95.23	95.23
Os12t0132400-01	Rice	nucleus	28.01	88.24
Os11t0134500-01	Rice	nucleus	79.67	82.58
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	81.54	82.05
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	80.71	81.38
Zm00001d010850_P003	Maize	plasma membrane	80.91	81.08
OQU82815	Sorghum	mitochondrion	71.58	75.16
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	71.37	73.5
VIT_11s0016g02270.t01	Wine grape	nucleus	69.29	70.46
KRH58776	Soybean	nucleus	67.22	68.5
PGSC0003DMT400034220	Potato	nucleus	64.94	66.74
Solyc07g039200.2.1	Tomato	nucleus	63.28	66.02
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.72	65.31
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	41.29	65.25
KRH42676	Soybean	nucleus	66.81	65.18
CDY48712	Canola	plastid	63.69	65.18
CDY03357	Canola	plastid	63.9	65.12
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	62.66	64.39
CDY21659	Canola	nucleus	63.07	64.27
Bra040681.1-P	Field mustard	cytosol	48.13	64.09
CDX81935	Canola	nucleus	62.86	63.79
CDX82701	Canola	nucleus	50.83	63.14
Solyc05g014090.1.1	Tomato	mitochondrion	50.41	61.21
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	47.3	60.16
CDY35872	Canola	cytosol, nucleus, plastid	42.12	59.71
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	56.85	59.18
HORVU2Hr1G092350.1	Barley	cytosol	8.92	30.94
HORVU5Hr1G084160.2	Barley	cytosol	20.95	24.11
HORVU3Hr1G066930.1	Barley	plastid	22.82	21.61
HORVU3Hr1G082800.3	Barley	cytosol, mitochondrion	8.92	13.35
Os12t0132300-02	Rice	cytosol	1.24	3.28
Os11t0134400-00	Rice	cytosol	1.24	3.28

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:AK367523	UniProt:F2DUF5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU4Hr1G026330
EnsemblPlants:HORVU4Hr1G026330.2	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00020071FA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DUF5]

Coordinates

chrchr4H:+:158433303..158437807

Molecular Weight (calculated)

53093.1 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.449

Length

482 amino acids

Sequence
(BLAST)

001: MGRTVKKAGK SKSKKGKGAK KADASSSAAA AVASGPAKVW QPGVDALEEG EELQFDPEAY NYLRGFSIGW PCLSFDVVQD QLGLVRSEFP HTLYGVAGTQ
101: AEKAPWNYIG VYKLSNINGK KREPIPSSKV EADSDMDSDS SSDEEEEEEI NEDIKPILHL KKVAHAGCVN RIRSMAQQPH ICATWGDTGH VQVWDFKSFL
201: NSIADSRPVA HKEDDIIHNH VPLKIFNGHK DEGYAIDWSP LVTGRLVSGD CNSRIHLWEP SSSTWDVHTE PFVGHSASVE DLQWSPTEAD VFASCSVDGR
301: ICIWDVRTKK EPCMSVKAHN ADVNVISWNR LASCMIASGC DDGSFSVRDL RLIKDPDSMV AHFEYHKHPI TSVEWSPHEA STLAVSSADH QLTIWDLSLE
401: KDAEEEAEFR AKMKEQANAP EDLPPQLLFV HQGQKDLKEL HWHPQIPGMI VSTAADGFNV LMPSNIDTTI AGADKPTLAP LG

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.