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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g104510.2.1
Solyc03g093640.2.1
Solyc07g064090.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G23380.1 Solyc07g064090.2.1 AT3G20740.1 14871310
AT2G23380.1 Solyc07g064090.2.1 AT3G20740.1 15456723
AT2G23380.1 Solyc07g064090.2.1 AT3G20740.1 18812497
AT2G23380.1 Solyc03g093640.2.1 AT5G51230.1 15456723
AT2G23380.1 Solyc01g104510.2.1 AT5G58230.1 23778966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400084490 Potato nucleus 97.07 96.96
VIT_07s0031g00320.t01 Wine grape nucleus 65.36 68.96
Solyc02g093200.2.1 Tomato endoplasmic reticulum, vacuole 33.55 66.74
KRH77020 Soybean nucleus 60.69 64.92
KRH28444 Soybean nucleus 60.37 64.58
GSMUA_AchrUn_... Banana nucleus 51.9 62.0
Solyc02g093190.2.1 Tomato nucleus 22.37 61.13
CDY38942 Canola nucleus, plastid 57.0 57.88
Bra032169.1-P Field mustard nucleus, plastid 57.0 57.88
AT2G23380.1 Thale cress nucleus 56.68 57.87
CDX89569 Canola nucleus, plastid 56.89 57.58
TraesCS7A01G128300.1 Wheat nucleus 54.61 56.71
TraesCS7D01G127100.2 Wheat nucleus 54.51 56.6
TraesCS7B01G028200.2 Wheat nucleus 54.4 56.48
Os06t0275500-01 Rice nucleus 54.07 55.58
EER89265 Sorghum plastid 56.13 55.41
HORVU7Hr1G026840.1 Barley cytosol, mitochondrion, nucleus 54.29 54.41
Zm00001d036296_P004 Maize nucleus, plastid 54.18 50.71
TraesCS7B01G028500.2 Wheat nucleus 43.87 50.37
TraesCS7D01G127400.1 Wheat nucleus 43.54 50.0
TraesCS7A01G128600.1 Wheat nucleus 42.45 48.81
HORVU7Hr1G026910.29 Barley cytosol, nucleus 41.69 48.79
Solyc01g079390.2.1 Tomato nucleus 42.67 47.41
Solyc07g006060.2.1 Tomato nucleus 6.51 24.39
Solyc07g008580.1.1 Tomato nucleus 6.19 20.5
Solyc09g060000.1.1 Tomato nucleus 4.89 17.11
Solyc07g008500.1.1 Tomato nucleus 5.1 16.32
Solyc12g100290.1.1 Tomato nucleus 6.73 14.29
Solyc07g008460.2.1 Tomato nucleus 6.84 13.94
Solyc09g098260.1.1 Tomato nucleus 8.69 13.61
Solyc01g006220.2.1 Tomato endoplasmic reticulum 6.62 13.53
Solyc03g083410.2.1 Tomato mitochondrion, nucleus 12.92 12.13
Solyc03g112690.1.1 Tomato nucleus 8.36 11.96
Solyc01g095890.2.1 Tomato nucleus 11.84 10.4
Solyc04g057880.2.1 Tomato nucleus 9.34 6.16
Solyc01g006880.2.1 Tomato nucleus 10.42 6.02
Solyc06g059960.2.1 Tomato nucleus 10.1 5.59
Solyc09g098250.2.1 Tomato nucleus 4.34 5.43
Protein Annotations
KEGG:00310+2.1.1.43MapMan:12.3.3.1.1.4MapMan:12.3.3.3Gene3D:2.170.270.10UniProt:A7X9Y2InterPro:CXC_dom
ncoils:CoilEMBL:EU057689GO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003727GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005677GO:GO:0006139GO:GO:0006342
GO:GO:0006349GO:GO:0006464GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008168
GO:GO:0009058GO:GO:0009294GO:GO:0009628GO:GO:0009653GO:GO:0009791GO:GO:0009965
GO:GO:0009987GO:GO:0010228GO:GO:0016043GO:GO:0016571GO:GO:0016740GO:GO:0018024
GO:GO:0019538GO:GO:0031519GO:GO:0032259GO:GO:0034968GO:GO:0040029GO:GO:0045857
GO:GO:0048586GO:GO:0070734InterPro:Hist-Lys_N-MeTrfase_EZInterPro:IPR001214InterPro:IPR025778InterPro:IPR026489
PFAM:PF00856PFscan:PS50280PFscan:PS51576PFscan:PS51633PANTHER:PTHR22884PANTHER:PTHR22884:SF237
InterPro:SANT/MybInterPro:SET_domSMART:SM00317SMART:SM00717SMART:SM01114SUPFAM:SSF82199
EnsemblPlantsGene:Solyc03g044380.2EnsemblPlants:Solyc03g044380.2.1InterPro:Tesmin/TSO1-like_CXCUniParc:UPI00015C29F3SEG:seg:
Description
Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A7X9Y2]
Coordinates
chr3:+:8959098..8968508
Molecular Weight (calculated)
102905.0 Da
IEP (calculated)
8.106
GRAVY (calculated)
-0.767
Length
921 amino acids
Sequence
(BLAST)
001: MSPASDNSLS DSQTQRLNDL SIVSPEEATV EPDEVLSVIE SLKRKIASER ADYIKKRVEG NTQKLENLTK DLYNLATERK CLEIFDAGGK IDLLSKRQKD
101: ALDMQNGIDT SNGDDDSNSS EDDGYATSAI LLGSSIAVKN AVRPIKLPEV KRIPPYTSWI FLDRNQRMTE DQSVVGRRRI YYDQNGGETL ICSDSDEEVL
201: EEEEEKKVFA ESEDYMLRMT IKEVGLSDIV LDLLGHCLSR KPSEVKARYE ALVKADDVGT SKNEFTESSL DLYLAKDLDA ALDSFDNLFC RRCLVFDCRL
301: HGCSQDLIFP AEKQSPWYCS NADMEPCGPN CFSLAKKFES NATVISPQCA SHGEKSILPS DVANNTQMPG RKHVSRRSKS SKGEGAPNAK NISESSDSDI
401: RPVNDITSNE RSSSPSKSKS DNKDGSNKRN SKRIAEHVLV AIKKRQKKMA VLESDTVASE SLGFKDLNLH SISRKENEDA SPSSQKAQCH STKRSRRKNS
501: PVLDSKNSLQ GKAFGCKVME VNSEKPVANC DDTLGKNEKV GENNCKQEVD GTKSWRPIEK ALFEKGLEMF GRSSCLIARN LMNGLKTCWE VFQYMNNSGN
601: KLFSGTGDGM DDILEGGCNG DGQEIMGEPR RRSRFLRRRG RVRRLKYTWK STGYHAIRKR ISERKDQPCR QFNPCGCQGP CGKECPCIVN GTCCEKYCGC
701: PKGCKNRFRG CHCAKSQCRS RQCPCFAAGR ECDPDVCRNC WISCGDGTLG VPPQRGDSHE CRNMKLLLKQ QQKVLLGRSD VSGWGAFLKN TVGKHEYLGE
801: YTGELISHRE ADKRGKIYDR ENSSFLFNLN DQFVLDAHRK GDKLKFANHS PVPNCYAKVM MVAGDHRVGI FANERICAGE ELFYDYRYEP DSAPAWARKP
901: EASGTRKEDA APSSGRARKH T
Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)
001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
Arabidopsis Description
CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.