Factsheet for Solyc09g060000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008500.1.1	Tomato	nucleus	74.52	68.06
PGSC0003DMT400059198	Potato	nucleus	81.37	59.78
Solyc07g008580.1.1	Tomato	nucleus	46.39	43.88
Solyc07g008460.2.1	Tomato	nucleus	65.78	38.27
CDX67669	Canola	cytosol, nucleus, plastid	36.88	37.74
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	47.15	33.07
VIT_18s0072g00220.t01	Wine grape	nucleus	46.01	32.7
Solyc07g006060.2.1	Tomato	nucleus	27.0	28.86
Bra015723.1-P	Field mustard	nucleus	48.29	27.55
CDX87571	Canola	nucleus	48.29	27.55
CDX88310	Canola	nucleus	47.53	27.11
KRH35109	Soybean	nucleus	49.43	27.08
KRG91687	Soybean	nucleus	50.19	26.61
VIT_18s0072g00200.t01	Wine grape	nucleus	52.09	26.6
AT1G76710.3	Thale cress	nucleus	50.95	25.82
Zm00001d003679_P006	Maize	nucleus	49.05	25.15
Os04t0429100-01	Rice	nucleus	49.05	24.9
EES10812	Sorghum	nucleus	49.05	24.76
TraesCS2A01G302100.1	Wheat	nucleus	47.15	24.7
TraesCS2D01G300800.1	Wheat	nucleus	46.77	24.5
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	46.77	24.4
GSMUA_Achr10P...	Banana	nucleus	50.19	24.04
TraesCS2B01G317900.1	Wheat	nucleus	47.15	23.44
Solyc12g100290.1.1	Tomato	nucleus	26.62	16.13
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	25.48	14.86
Solyc02g093200.2.1	Tomato	endoplasmic reticulum, vacuole	15.21	8.64
Solyc03g112690.1.1	Tomato	nucleus	20.91	8.54
Solyc09g098260.1.1	Tomato	nucleus	17.49	7.82
Solyc01g079390.2.1	Tomato	nucleus	17.87	5.67
Solyc04g057880.2.1	Tomato	nucleus	30.04	5.66
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	20.91	5.61
Solyc01g095890.2.1	Tomato	nucleus	21.29	5.34
Solyc06g059960.2.1	Tomato	nucleus	32.32	5.11
Solyc03g044380.2.1	Tomato	nucleus	17.11	4.89
Solyc01g006880.2.1	Tomato	nucleus	20.91	3.45
Solyc09g098250.2.1	Tomato	nucleus	0.76	0.27
Solyc02g093190.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR003616
UniProt:K4CTT3	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PANTHER:PTHR45396	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF82199	EnsemblPlantsGene:Solyc09g060000.1	EnsemblPlants:Solyc09g060000.1.1	UniParc:UPI000276B946

Description

No Description!

Coordinates

chr9:-:57212553..57214682

Molecular Weight (calculated)

29273.8 Da

IEP (calculated)

8.395

GRAVY (calculated)

-0.392

Length

263 amino acids

Sequence
(BLAST)

001: MLALVAAAMA GTCDLDNFTI SLRFPSSYSI RFQKCEYAKS KLFRTEGRGW GLSADENIKA GQFIMEYCGE VLSSEAAKKR CLAYEAHKIK DAYIMSLNAN
101: YFIDATKKGS LARFINHSCQ PNCETRKWIV LGETRVGIFA KRDISVGMEL SYNYNFEWYG GAPVHCLCGA ANCSLFLGAK SQGSRLAQEC STVLEEGNNR
201: HIVENLPLYD DESSPVISGT SGGNEHTKIL NDGEGSTFQL EPTNSATKKK YQHKPKLKRL KNW

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.