Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G000600.1 | Wheat | cytosol | 91.83 | 91.38 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 91.33 | 90.73 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 90.67 | 89.77 |
| KXG37542 | Sorghum | nucleus | 72.83 | 72.71 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 73.33 | 72.61 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 15.0 | 72.58 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 78.5 | 71.69 |
| OQU89244 | Sorghum | nucleus | 71.0 | 67.94 |
| Zm00001d034036_P003 | Maize | golgi | 68.5 | 67.49 |
| Zm00001d020036_P002 | Maize | nucleus | 70.33 | 61.61 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 25.67 | 60.16 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 31.33 | 49.87 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 53.17 | 49.69 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 53.67 | 48.64 |
| KRH28171 | Soybean | nucleus | 34.33 | 48.47 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 52.83 | 47.89 |
| Solyc03g093640.2.1 | Tomato | nucleus | 50.83 | 47.81 |
| CDY43476 | Canola | nucleus | 11.83 | 47.65 |
| KRH77315 | Soybean | nucleus | 33.83 | 47.43 |
| AT5G51230.1 | Thale cress | nucleus | 49.17 | 46.75 |
| CDX91573 | Canola | nucleus | 49.0 | 46.67 |
| CDY16330 | Canola | nucleus | 48.67 | 46.2 |
| Bra022541.1-P | Field mustard | nucleus | 48.67 | 46.2 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 48.17 | 45.73 |
| CDY00460 | Canola | nucleus, plastid | 48.17 | 45.73 |
| CDX99960 | Canola | nucleus | 48.17 | 45.73 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 52.0 | 45.22 |
| KRH33365 | Soybean | nucleus | 45.67 | 45.07 |
| KRG90126 | Soybean | nucleus | 45.33 | 44.74 |
| Bra015201.1-P | Field mustard | cytosol | 23.33 | 40.7 |
| CDY00458 | Canola | cytosol | 23.33 | 40.7 |
| CDY71414 | Canola | nucleus | 26.0 | 38.81 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 14.67 | 37.93 |
| CDX76587 | Canola | nucleus | 26.0 | 36.88 |
| Bra021078.1-P | Field mustard | nucleus | 26.0 | 36.71 |
| AT4G16845.1 | Thale cress | nucleus | 26.67 | 36.36 |
| CDX84180 | Canola | cytosol | 10.0 | 27.4 |
| Bra005316.1-P | Field mustard | nucleus | 10.17 | 25.74 |
| CDY42943 | Canola | nucleus | 19.0 | 24.52 |
| Bra040097.1-P | Field mustard | nucleus | 19.0 | 24.52 |
| CDY35632 | Canola | cytosol | 18.17 | 24.11 |
| CDY33160 | Canola | nucleus | 16.33 | 21.3 |
| CDY31712 | Canola | nucleus | 12.33 | 21.2 |
| KRH34601 | Soybean | nucleus | 27.0 | 20.66 |
| CDX75032 | Canola | mitochondrion, nucleus | 12.33 | 19.37 |
| Bra005262.1-P | Field mustard | mitochondrion | 12.33 | 19.37 |
| CDY38857 | Canola | nucleus | 23.17 | 18.68 |
| Bra029179.1-P | Field mustard | nucleus | 26.5 | 18.4 |
| CDX84179 | Canola | cytosol | 12.5 | 18.38 |
| AT4G16810.1 | Thale cress | nucleus | 8.33 | 16.67 |
| AT2G35670.1 | Thale cress | nucleus | 16.5 | 13.11 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G023900.1 | EnsemblPlantsGene:TraesCS2B01G023900 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:11082089..11090077
Molecular Weight (calculated)
68103.2 Da
IEP (calculated)
6.778
GRAVY (calculated)
-0.368
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRQPSTLHL SPDEQLAAEE TFKLYCKPVE LCNVIQKRAL DNPAFLQRCL HYMIQARHKK RIQLTASLSR GTNTEWPDQN IFPLYLLLAT PTSDNIPLEG
101: HSPIYRFSHA CLLTSFSELD SKEHSKATFI IPDVKNIATS RACNLSIILI RCEGQVGENN CSVEASALRK LEGKCFWGKI PINLLGSSLE NCVPLNLGHT
201: VELASTVTMS PSFLEPKFLE QDSCLTFCSH KVDATGSYQL QVGISVQEAG ARDMSESPYN SYSYSDVPPS SLPHIIRLRA GNVLFNFKYY NNTMQKTEVT
301: EDFACAFCLV KCGSYKGLGC HLNSTHDLFH FEFWISEECQ AVNVSLKADA WKMELVGKGV DPRHQTFSYC SRLKMRRRRL VATAENISPV HPHIMDSGSP
401: EDAQALAGSK DEFVQREDDN NSVALDSAEH DHSLNGSNLT PLTVLEFGKT RKLSAERSDP RNRQLLQKRQ FFHSHRAQPM AVEQVLSDHD SEDEVDDDIA
501: DLEDRRMLAD FLDVTKDEKL IMHMWNSFIR KQRVLADGHI PWACEGFSRL HGPQLVQNPP LLWCWRFVMI KLWNHSLLDA RAMNTCNTIL EGYQPKKKMF
101: HSPIYRFSHA CLLTSFSELD SKEHSKATFI IPDVKNIATS RACNLSIILI RCEGQVGENN CSVEASALRK LEGKCFWGKI PINLLGSSLE NCVPLNLGHT
201: VELASTVTMS PSFLEPKFLE QDSCLTFCSH KVDATGSYQL QVGISVQEAG ARDMSESPYN SYSYSDVPPS SLPHIIRLRA GNVLFNFKYY NNTMQKTEVT
301: EDFACAFCLV KCGSYKGLGC HLNSTHDLFH FEFWISEECQ AVNVSLKADA WKMELVGKGV DPRHQTFSYC SRLKMRRRRL VATAENISPV HPHIMDSGSP
401: EDAQALAGSK DEFVQREDDN NSVALDSAEH DHSLNGSNLT PLTVLEFGKT RKLSAERSDP RNRQLLQKRQ FFHSHRAQPM AVEQVLSDHD SEDEVDDDIA
501: DLEDRRMLAD FLDVTKDEKL IMHMWNSFIR KQRVLADGHI PWACEGFSRL HGPQLVQNPP LLWCWRFVMI KLWNHSLLDA RAMNTCNTIL EGYQPKKKMF
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
Arabidopsis Description
EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.