Factsheet for TraesCS6B01G010900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G213800.1
TraesCS1B01G227600.1
TraesCS1D01G216600.1
TraesCS6A01G131400.1
TraesCS6A01G399300.1
TraesCS6B01G159800.1
TraesCS6D01G121300.1
TraesCS6D01G383500.1
TraesCS7A01G358400.1
TraesCS7B01G269300.2
TraesCS7D01G364400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	TraesCS1A01G213800.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1B01G227600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1D01G216600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7A01G358400.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7B01G269300.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS7D01G364400.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS6A01G131400.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6B01G159800.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6D01G121300.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6A01G399300.1	AT5G16070.1	21798944
AT3G03960.1	TraesCS6D01G383500.1	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G165400.1	Wheat	cytosol	89.83	88.33
HORVU4Hr1G040660.1	Barley	cytosol	89.45	87.96
TraesCS6D01G008000.1	Wheat	cytosol	90.96	84.74
EES09994	Sorghum	cytosol	85.69	83.03
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	85.31	82.97
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	85.31	82.66
GSMUA_Achr8P04580_001	Banana	cytosol	80.79	78.86
Zm00001d007508_P005	Maize	cytosol	84.75	78.53
Solyc01g088080.2.1	Tomato	nucleus	79.47	78.0
PGSC0003DMT400017609	Potato	cytosol	79.28	77.82
VIT_08s0007g07460.t01	Wine grape	cytosol	79.66	77.61
GSMUA_Achr3P25570_001	Banana	cytosol	79.47	77.57
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	78.72	76.7
KRH70153	Soybean	nucleus	78.15	76.15
Bra036422.1-P	Field mustard	cytosol	74.2	72.43
CDY29973	Canola	cytosol	74.01	72.24
CDY21153	Canola	cytosol	73.63	71.88
CDX92056	Canola	cytosol	74.01	71.72
CDX74202	Canola	cytosol, plasma membrane	73.63	71.35
Bra001094.1-P	Field mustard	cytosol	73.63	71.35
CDY42892	Canola	cytosol	72.88	71.14
AT3G03960.1	Thale cress	cytosol	73.45	71.04
Bra031959.1-P	Field mustard	cytosol	72.69	70.96
CDY50868	Canola	cytosol	72.5	70.77
CDY50320	Canola	cytosol	31.64	63.64
CDX79329	Canola	cytosol	30.7	61.74
TraesCS1B01G218800.1	Wheat	cytosol	24.48	27.54
TraesCS3B01G595300.1	Wheat	cytosol	6.78	26.67
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	26.55	25.87
TraesCS7B01G237000.1	Wheat	cytosol	26.93	25.31
TraesCS4B01G250200.1	Wheat	cytosol	23.35	24.8
TraesCS7B01G068100.1	Wheat	golgi, unclear	24.48	24.34
TraesCS5B01G341900.1	Wheat	cytosol	23.73	23.73
TraesCS1B01G227600.1	Wheat	cytosol	23.16	22.99
TraesCS7B01G269300.2	Wheat	cytosol	22.6	22.43
TraesCS6B01G159800.1	Wheat	cytosol	23.35	22.26
TraesCS6B01G391500.1	Wheat	mitochondrion	21.66	22.03

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	EnsemblPlantsGene:TraesCS6B01G010900	EnsemblPlants:TraesCS6B01G010900.1
TIGR:cd03341	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:6537247..6541509

Molecular Weight (calculated)

56591.2 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.061

Length

531 amino acids

Sequence
(BLAST)

001: MGTSTSRAST RPSSRTSAPP ARSPPSAITR TSLGPNGMNK MVINHLDKHF ITNDAATIVN ELEVQHPAAK LLVLAARAQQ EEIGDGANLT ISFAGELLDK
101: AEELIRMGLH PSEIIIGYTK AINKTLEILE DLVEKGSENM DVRNKEEVVL RMKSAVASKQ FGREDVLCPL VADACIQVCP ENPANFNVDN VRVAKLVGGG
201: LHNSSVVRGM VLKNDAVGSI TKVENVMVAV FAGGVDTSAT ETKGTVLIHS AEHLENYAKT EEAKVEELIK SVADSGGKVI VSGAAVGDMA LHFCERYKLM
301: VLKVSSKFEL RRLCRTTGAV ALLKLSRPTA GELGYADSVS AEEIGGARVT VVQNEGGGNS VATVVLRGST DSILDDLERA VDDGVNTYKC MCRDSRIIPG
401: AAATEVELAK KLKQFSLKET GLDQYAIAKF GESFEMVPRT LSENAGLGAM GIISSLYAEH AAGNVKVGID LKDGACKDAS IMKIWDLYIT KSFALKYSAD
501: VVCTVLRVDQ IIMAKPAGGP RPPKQGGMDE D

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.