Factsheet for TraesCS6D01G383500.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G399300.1	Wheat	golgi	99.63	99.63
HORVU6Hr1G091690.4	Barley	cytosol, plastid	99.07	92.98
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	91.78	91.78
EER97762	Sorghum	cytosol	90.65	90.65
Zm00001d007192_P001	Maize	cytosol	91.22	90.54
GSMUA_Achr1P14710_001	Banana	cytosol	89.35	89.35
GSMUA_Achr4P16540_001	Banana	cytosol	88.6	88.6
Solyc02g063090.2.1	Tomato	nucleus, unclear	88.22	88.22
PGSC0003DMT400062134	Potato	cytosol	88.04	88.04
VIT_14s0006g03200.t01	Wine grape	cytosol	87.66	87.66
Solyc02g085790.2.1	Tomato	extracellular	86.54	86.54
PGSC0003DMT400033011	Potato	cytosol	86.36	86.36
AT3G02530.1	Thale cress	cytosol	86.36	86.36
CDY28697	Canola	cytosol	85.61	85.61
CDY51544	Canola	cytosol	85.61	85.61
Bra040591.1-P	Field mustard	cytosol	85.61	85.61
CDY26490	Canola	cytosol	85.42	85.26
CDX78670	Canola	cytosol	85.23	85.23
CDX70671	Canola	cytosol	85.23	85.23
Bra008652.1-P	Field mustard	cytosol	85.23	85.07
CDX69477	Canola	cytosol	85.23	85.07
AT5G16070.1	Thale cress	cytosol	84.67	84.67
Bra006338.1-P	Field mustard	cytosol	71.78	84.58
KRH46911	Soybean	endoplasmic reticulum	84.49	84.49
KRH01781	Soybean	nucleus	84.49	84.49
TraesCS4D01G250100.1	Wheat	cytosol	27.66	29.6
TraesCS5D01G347400.1	Wheat	cytosol	28.79	29.17
TraesCS1D01G216600.1	Wheat	cytosol	27.29	27.29
TraesCS7D01G364400.2	Wheat	cytosol	27.1	27.1
TraesCS1D01G208500.1	Wheat	cytosol	24.67	26.51
TraesCS7D01G056800.1	Wheat	cytosol	26.73	26.24
TraesCS7D01G164400.1	Wheat	cytosol	25.61	25.66
TraesCS6D01G121300.1	Wheat	cytosol	25.98	24.96
TraesCS7D01G218500.2	Wheat	cytosol	26.54	24.87
TraesCS7D01G332900.1	Wheat	cytosol	25.61	24.25
TraesCS4D01G157300.1	Wheat	cytosol	23.55	23.46
TraesCS6D01G008000.1	Wheat	cytosol	23.18	21.75

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	EnsemblPlantsGene:TraesCS6D01G383500	EnsemblPlants:TraesCS6D01G383500.1	TIGR:cd03342	SEG:seg

Description

No Description!

Coordinates

chr6D:+:462461497..462466675

Molecular Weight (calculated)

59041.7 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.200

Length

535 amino acids

Sequence
(BLAST)

001: MSIRMLNQNA EVMNKSAALA MNIGAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDTSGDG TTSTVLFIGE
101: LMKMSERCIE EGTHPRFLVD GFEVAKKATL EFLETFKTPV VIGDQPDREI LKMVARTTLR TKLYEGLADQ LTNIVVNAVL CIRQSDQPID LFMVEIMHMR
201: HKFDVDTRLI EGLVLDHGSR HPDMKRRAEN CYILTANVSL EYEKSEINAG FFYSNAEQRE KMVTAERRQV DERVQKIIEL KNKVCAGTDK NFVVINQKGI
301: DPPSLDLLAR AGIIALRRAK RRNMERLVLA CGGEAINSVE GMTEDCLGWA GLVYEHVLGE EKYTFVENVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTVEDEAV VLGAGAFEMA ARKHLIDNVK KTVKGRAQLG VGAFADALLV IPKTLAENSG LDTQDVIVSL ENEHDRGLVV GLNHNTGEPV DPEMEGIYDN
501: YSVKRQIVNS GPIIASQLLL VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.